View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_71 (Length: 325)
Name: NF7721_low_71
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 152164 - 151871
Alignment:
| Q |
16 |
atcaagtcccttgtgatgcttttgctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgatttggattgcttgtattcatgtt |
115 |
Q |
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| T |
152164 |
atcaagtcccttgtgatgcttttgctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgacttggattgcttgtattcatgtt |
152065 |
T |
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| Q |
116 |
catgttttgatgtatccgacttccatgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaatttctctttgct |
215 |
Q |
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| T |
152064 |
catgttttgatgtatccgacttccatgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaatttctctttgct |
151965 |
T |
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| Q |
216 |
tatgttgggaaatttctctgcataacattttcttatttgttgttctttgctttcgagatagagtttgtagatcttgatcatggattgttgattg |
309 |
Q |
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| T |
151964 |
tatgttgggaaatttctctgcataacattttcttatttgttgttctttgctttcgagatagagtttgtagatcttgatcatggattgttgattg |
151871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 160599 - 160306
Alignment:
| Q |
16 |
atcaagtcccttgtgatgcttttgctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgatttggattgcttgtattcatgtt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
160599 |
atcaagtcccttgtgatgcttttgctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgacttggattgcttgtattcatgtt |
160500 |
T |
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| Q |
116 |
catgttttgatgtatccgacttccatgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaatttctctttgct |
215 |
Q |
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| T |
160499 |
catgttttgatgtatccgacttccatgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaatttctctttgct |
160400 |
T |
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| Q |
216 |
tatgttgggaaatttctctgcataacattttcttatttgttgttctttgctttcgagatagagtttgtagatcttgatcatggattgttgattg |
309 |
Q |
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| T |
160399 |
tatgttgggaaatttctctgcataacattttcttatttcttgttctttgttttcgagatagagtttgtagttcttgatcatggattgttgattg |
160306 |
T |
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