View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_low_72 (Length: 321)

Name: NF7721_low_72
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_low_72
NF7721_low_72
[»] chr8 (6 HSPs)
chr8 (41-216)||(35387227-35387398)
chr8 (229-307)||(35387161-35387239)
chr8 (132-173)||(42111907-42111948)
chr8 (37-89)||(30272210-30272261)
chr8 (37-70)||(36935743-36935776)
chr8 (41-107)||(42573695-42573760)
[»] scaffold0180 (1 HSPs)
scaffold0180 (132-181)||(22599-22648)
[»] chr3 (1 HSPs)
chr3 (132-181)||(46740107-46740156)
[»] chr4 (6 HSPs)
chr4 (41-107)||(25655504-25655571)
chr4 (132-176)||(39413245-39413289)
chr4 (41-107)||(11680392-11680459)
chr4 (41-107)||(11688671-11688738)
chr4 (41-107)||(12590068-12590135)
chr4 (41-107)||(46764368-46764435)
[»] chr6 (3 HSPs)
chr6 (43-107)||(931042-931107)
chr6 (37-107)||(10608185-10608256)
chr6 (132-176)||(18605382-18605426)
[»] chr7 (1 HSPs)
chr7 (132-176)||(33687405-33687449)
[»] chr1 (1 HSPs)
chr1 (132-176)||(32538126-32538170)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 41 - 216
Target Start/End: Complemental strand, 35387398 - 35387227
Alignment:
Q  41 ccacatcatcttccaccactacccttctccacctacctctgtgccttttcctcttaagcaaaacaacttcttcaaaaaatccagaacacatgattcatca 140  Q
    |||||||||||||||||| ||||    ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35387398 ccacatcatcttccaccattacc----tccccctacctctgtgcctttacctcttaagcaaaacaacttcttcaaaaaatccagaacacatgattcatca 35387303  T
Q  141 ccatcatcatcaacatccttgaaaacaaaaccccaacatccttaaatatcgttacattaatgcatttcttacacac 216  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  35387302 ccatcatcatcaacatccttgaaaacaaaatcccaacatccttgaatatcgttacattaatgcatttcttacacac 35387227  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 35387239 - 35387161
Alignment:
Q  229 atttcttacccactaagaattgaaaacgtgtgtttttattgtactattaaagaaaattttgtgagaggagttttttatt 307  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35387239 atttcttacacactaagaattgaaaacgtgtgtttttattgtactattaaagaaaattttgtgagagaagttttttatt 35387161  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 42111907 - 42111948
Alignment:
Q  132 gattcatcaccatcatcatcaacatccttgaaaacaaaaccc 173  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42111907 gattcatcaccatcatcatcaacatccttgaaaacaaaaccc 42111948  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 30272210 - 30272261
Alignment:
Q  37 ttttccacatcatcttccaccactacccttctccacctacctctgtgcctttt 89  Q
    ||||||||||||||||||||||| |||||||||| ||||||| |||| |||||    
T  30272210 ttttccacatcatcttccaccaccacccttctcc-cctacctttgtgtctttt 30272261  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 36935743 - 36935776
Alignment:
Q  37 ttttccacatcatcttccaccactacccttctcc 70  Q
    ||||||||||||||||||||||| ||||||||||    
T  36935743 ttttccacatcatcttccaccaccacccttctcc 36935776  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 42573695 - 42573760
Alignment:
Q  41 ccacatcatcttccaccactacccttctccacctacctctgtgccttttcctctt-aagcaaaacaac 107  Q
    ||||||||||||||||||| |||||  ||| | ||||| |||| ||||||||||| ||||||||||||    
T  42573695 ccacatcatcttccaccaccaccct--tccccttacctttgtgtcttttcctcttgaagcaaaacaac 42573760  T

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Target: scaffold0180 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 22648 - 22599
Alignment:
Q  132 gattcatcaccatcatcatcaacatccttgaaaacaaaaccccaacatcc 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22648 gattcatcaccatcatcatcaacatccttgaaaacaaaaccccaaaatcc 22599  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 46740107 - 46740156
Alignment:
Q  132 gattcatcaccatcatcatcaacatccttgaaaacaaaaccccaacatcc 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46740107 gattcatcaccatcatcatcaacatccttgaaaacaaaaccccaaaatcc 46740156  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 25655571 - 25655504
Alignment:
Q  41 ccacatcatcttccaccactacccttctccacctacctctgtgccttttcctctt-aagcaaaacaac 107  Q
    ||||||||||||||||||| |||||||||| ||||||| |||| ||||||||||| ||||||| ||||    
T  25655571 ccacatcatcttccaccaccacccttctccccctacctttgtgtcttttcctcttgaagcaaagcaac 25655504  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 39413289 - 39413245
Alignment:
Q  132 gattcatcaccatcatcatcaacatccttgaaaacaaaaccccaa 176  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||    
T  39413289 gattcatcaccatcatcttcaacatgcttgaaaacaaaaccccaa 39413245  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 11680392 - 11680459
Alignment:
Q  41 ccacatcatcttccaccactacccttctccacctacctctgtgccttttcctctt-aagcaaaacaac 107  Q
    ||||||||||||||||||| ||| |||||| ||||||| |||| ||||||||||| ||||||| ||||    
T  11680392 ccacatcatcttccaccaccacctttctccccctacctttgtgtcttttcctcttgaagcaaagcaac 11680459  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 11688671 - 11688738
Alignment:
Q  41 ccacatcatcttccaccactacccttctccacctacctctgtgccttttcctctt-aagcaaaacaac 107  Q
    ||||||||||||||||||| ||| |||||| ||||||| |||| ||||||||||| ||||||| ||||    
T  11688671 ccacatcatcttccaccaccacctttctccccctacctttgtgtcttttcctcttgaagcaaagcaac 11688738  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 12590135 - 12590068
Alignment:
Q  41 ccacatcatcttccaccactacccttctccacctacctctgtgccttttcctctt-aagcaaaacaac 107  Q
    ||||||||||||||||||| ||| |||||| ||||||| |||| ||||||||||| ||||||| ||||    
T  12590135 ccacatcatcttccaccaccacctttctccccctacctttgtgtcttttcctcttgaagcaaagcaac 12590068  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 46764368 - 46764435
Alignment:
Q  41 ccacatcatcttccaccactacccttctccacctacctctgtgccttttcctctt-aagcaaaacaac 107  Q
    ||||||||||||||||||| |||||||||| | ||||| |||| ||||||||||| ||||||| ||||    
T  46764368 ccacatcatcttccaccaccacccttctccccatacctttgtgtcttttcctcttgaagcaaagcaac 46764435  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 931042 - 931107
Alignment:
Q  43 acatcatcttccaccactacccttctccacctacctctgtgccttttcctctt-aagcaaaacaac 107  Q
    ||||||||||||||||| |||||||||| ||||||| |||| ||||||||||| ||||||| ||||    
T  931042 acatcatcttccaccaccacccttctccccctacctttgtgtcttttcctcttgaagcaaagcaac 931107  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 10608256 - 10608185
Alignment:
Q  37 ttttccacatcatcttccaccactacccttctccacctacctctgtgccttttcctctt-aagcaaaacaac 107  Q
    ||||||||||||||||||||||| |||||||||| ||||| | ||||  |||||||||| ||||||| ||||    
T  10608256 ttttccacatcatcttccaccaccacccttctccccctacatttgtgtattttcctcttgaagcaaagcaac 10608185  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 18605382 - 18605426
Alignment:
Q  132 gattcatcaccatcatcatcaacatccttgaaaacaaaaccccaa 176  Q
    ||||||||||||||||| ||||||| || ||||||||||||||||    
T  18605382 gattcatcaccatcatcttcaacatgctggaaaacaaaaccccaa 18605426  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 33687449 - 33687405
Alignment:
Q  132 gattcatcaccatcatcatcaacatccttgaaaacaaaaccccaa 176  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||    
T  33687449 gattcatcaccatcatcttcaacatgcttgaaaacaaaaccccaa 33687405  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 32538170 - 32538126
Alignment:
Q  132 gattcatcaccatcatcatcaacatccttgaaaacaaaaccccaa 176  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||    
T  32538170 gattcatcaccatcatcttcaacatgcttgaaaacaaaaccccaa 32538126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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