View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_low_80 (Length: 302)

Name: NF7721_low_80
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_low_80
NF7721_low_80
[»] chr4 (1 HSPs)
chr4 (1-292)||(29103078-29103369)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 29103369 - 29103078
Alignment:
Q  1 ctcttctctctcgggagctggatgttggtctaaaacctccattgtctgattcagaatcatcccaatcttgaagtgatttctgtcataattcaactttata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29103369 ctcttctctctcgggagctggatgttggtctaaaacctccattgtctgattcagaatcatcccaatcttgaagtgatttctgtcataattcaactttata 29103270  T
Q  101 agattgataaagatatcatcatgtaatatatattacataattgatgatgttgcttacctctctaatctcattgaaactcactgcatagaaggtcactact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29103269 agattgataaagatatcatcatgtaatatatattacataattgatgatgttgcttacctctctaatctcattgaaactcactgcatagaaggtcactact 29103170  T
Q  201 gcagctgcaacaatgcccaaaactggaagagcgaattgcattgcatccatttctgatgatatatctctctcactttttgtgtttcttcttct 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29103169 gcagctgcaacaatgcccaaaactggaagagcgaattgcattgcatccatttctgatgatatatctctctcactttttgtgtttcttcttct 29103078  T

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