View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7721_low_81 (Length: 300)
Name: NF7721_low_81
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_81 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 93 - 217
Target Start/End: Original strand, 1574946 - 1575070
Alignment:
| Q |
93 |
ttatttgagagttagattatgaagaagtatatgagtgtgtagggaaaaaagtgggagaatggaacatccatcgtttctctcatcacattattttaggaca |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1574946 |
ttatttgagagttagattatgaagaagtatatgagtgtgtagggaaaaaagtgggagaatggaacatccatcgtttctctcatcacattattttaggaca |
1575045 |
T |
|
| Q |
193 |
taagttgtatagcttgatggttcta |
217 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1575046 |
taagttgtatagcttgatggttcta |
1575070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 1575084 - 1575128
Alignment:
| Q |
239 |
ataatcaattggtcaagagaaaaatcattttagaaaggtttcaac |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1575084 |
ataatcaattggtcaagagaaaaatcattttagaaaggtttcaac |
1575128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University