View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_82 (Length: 299)
Name: NF7721_low_82
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_82 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 20933673 - 20933940
Alignment:
| Q |
14 |
tggacatcaatttcacccaaatgcttaaggaccaaaacttccctctatcatataccaacataagcagcacccaaatgcttttgaacctaatcttccctct |
113 |
Q |
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| T |
20933673 |
tggacatcaatttcacccaaatgcttaaggaccaaaacttccctctatcatataccaacataagcagcacccaaatgcttttgaaccaaatcttccctct |
20933772 |
T |
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| Q |
114 |
gccatataccaaattaagcaaaccatagatcgagatagaatttctccagcaaagtccatatgcagcaaccataacaaccatgtgtttctcattggctaca |
213 |
Q |
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| T |
20933773 |
gtcatataccaaattaagcaaaccatagatcgagatagaatttctccagcaaagtccatatgcagcaaccataacaaccatgtgtttctcattggctaca |
20933872 |
T |
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| Q |
214 |
tcaaacggtctttcaaaacaagcattggaaccacttacaataccttccatggagaaaatctctatttg |
281 |
Q |
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| T |
20933873 |
tcaaacggtctttcaaaacaagcattggaaccacttacaataccttccatggagaaaatctctatttg |
20933940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 24157064 - 24156985
Alignment:
| Q |
14 |
tggacatcaatttcacccaaatgcttaaggaccaaaacttccctctatcatataccaacataagcagcacccaaatgctt |
93 |
Q |
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| T |
24157064 |
tggatatcaattgcacccaaatgcttaaggaccaaaactgccctctatcatatactaaattaagctgcatccaaatgctt |
24156985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 54360987 - 54360890
Alignment:
| Q |
46 |
caaaacttccctctatcatataccaacataagcagcacccaaatgcttttgaacctaatcttccctctgccatataccaaattaagcaaaccatagat |
143 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54360987 |
caaaactttcctctgtcatataccaacataagcagcacccaaatgcttttgaaccaaatcttccctctgtcatataccaaattaagcaaaccatagat |
54360890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 24213429 - 24213350
Alignment:
| Q |
14 |
tggacatcaatttcacccaaatgcttaaggaccaaaacttccctctatcatataccaacataagcagcacccaaatgctt |
93 |
Q |
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|||| ||||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
24213429 |
tggatatcaattgcacccaaatgcttgacgaccaaaacttccctctatcatataccaaattaagccgcacccaaatgctt |
24213350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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