View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_low_83 (Length: 297)

Name: NF7721_low_83
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_low_83
NF7721_low_83
[»] chr3 (2 HSPs)
chr3 (20-281)||(270567-270828)
chr3 (100-156)||(8173130-8173186)
[»] chr5 (1 HSPs)
chr5 (104-156)||(14717342-14717394)
[»] chr1 (2 HSPs)
chr1 (104-156)||(51587378-51587430)
chr1 (100-153)||(40614162-40614215)
[»] chr4 (3 HSPs)
chr4 (104-158)||(21218989-21219043)
chr4 (104-156)||(31053046-31053098)
chr4 (104-156)||(55259954-55260006)
[»] chr2 (4 HSPs)
chr2 (102-156)||(27671295-27671349)
chr2 (106-159)||(9277525-9277578)
chr2 (104-152)||(18587181-18587229)
chr2 (100-156)||(32650225-32650281)
[»] chr8 (2 HSPs)
chr8 (106-134)||(10172426-10172454)
chr8 (104-156)||(42109622-42109674)
[»] chr7 (3 HSPs)
chr7 (104-156)||(23540183-23540235)
chr7 (104-156)||(31426691-31426743)
chr7 (105-161)||(33815792-33815848)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 270567 - 270828
Alignment:
Q  20 attaaggtattttctactaaagnnnnnnnctctcctttaaacaagtgaggtagtagtagtagacacactccaactcatacttttatattcattaattgac 119  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  270567 attaaggtattttctactaaagtttttttctctcctttaaacaagtgaggtagtagtagtagacacactccaactcatacttttatattcattaattgac 270666  T
Q  120 gtaacaacacattattagttacatgtgtaaaataattttataccattagcatattgcaattaaactcttataatatacattccattataagatttcattt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  270667 gtaacaacacattattagttacatgtgtaaaataattttataccattagcatattgcaattaaactcttatagtatatattccattataagatttcattt 270766  T
Q  220 agttagatttttcttcttggagattgtaacactcaaaagaagtgatttagaatgatgtatgt 281  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||    
T  270767 agttagatttttcttcttcgagattgtaacactcaaaagaagtgatctaaaatgatgtatgt 270828  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 8173186 - 8173130
Alignment:
Q  100 ttttatattcattaattgacgtaacaacacattattagttacatgtgtaaaataatt 156  Q
    ||||||||||||||||| |||| |||||| || ||||| ||||| ||||||||||||    
T  8173186 ttttatattcattaattaacgtgacaacatatcattagatacatatgtaaaataatt 8173130  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 14717342 - 14717394
Alignment:
Q  104 atattcattaattgacgtaacaacacattattagttacatgtgtaaaataatt 156  Q
    ||||||||||||||| || ||||||||| ||||| | ||||||||||||||||    
T  14717342 atattcattaattgatgtgacaacacatcattagatgcatgtgtaaaataatt 14717394  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 51587430 - 51587378
Alignment:
Q  104 atattcattaattgacgtaacaacacattattagttacatgtgtaaaataatt 156  Q
    ||||||||||||||||||| ||||||||| || | | ||||||||||||||||    
T  51587430 atattcattaattgacgtagcaacacattgtttgatgcatgtgtaaaataatt 51587378  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 40614162 - 40614215
Alignment:
Q  100 ttttatattcattaattgacgtaacaacacattattagttacatgtgtaaaata 153  Q
    ||||||||||||||||| | |||||||||||| |||   |||||||||||||||    
T  40614162 ttttatattcattaatttatgtaacaacacataattgaatacatgtgtaaaata 40614215  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 21218989 - 21219043
Alignment:
Q  104 atattcattaattgacgtaacaacacattattagttacatgtgtaaaataatttt 158  Q
    ||||| |||||||||||| |||||||| |||||  | ||||||||||||||||||    
T  21218989 atatttattaattgacgtgacaacacactattaaatgcatgtgtaaaataatttt 21219043  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 31053046 - 31053098
Alignment:
Q  104 atattcattaattgacgtaacaacacattattagttacatgtgtaaaataatt 156  Q
    |||||||||||||||||  ||||||||| ||| | | ||||||||||||||||    
T  31053046 atattcattaattgacgcgacaacacatcattggatgcatgtgtaaaataatt 31053098  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 55259954 - 55260006
Alignment:
Q  104 atattcattaattgacgtaacaacacattattagttacatgtgtaaaataatt 156  Q
    |||||||| ||||||| | ||||||||| ||||| |||||| |||||||||||    
T  55259954 atattcatcaattgacatgacaacacatcattagatacatgcgtaaaataatt 55260006  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 27671349 - 27671295
Alignment:
Q  102 ttatattcattaattgacgtaacaacacattattagttacatgtgtaaaataatt 156  Q
    ||||||||||||||| | || |||||||||||| || || |||||||||||||||    
T  27671349 ttatattcattaatttatgtgacaacacattatcagataaatgtgtaaaataatt 27671295  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 9277578 - 9277525
Alignment:
Q  106 attcattaattgacgtaacaacacattattagttacatgtgtaaaataatttta 159  Q
    |||||||||||||||| ||| ||||||||||| |  || |||||||||||||||    
T  9277578 attcattaattgacgtgacaccacattattagatgaatatgtaaaataatttta 9277525  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 18587229 - 18587181
Alignment:
Q  104 atattcattaattgacgtaacaacacattattagttacatgtgtaaaat 152  Q
    |||||||||||||||||| | ||||||||||| | | ||||||||||||    
T  18587229 atattcattaattgacgtgataacacattattggatgcatgtgtaaaat 18587181  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 32650225 - 32650281
Alignment:
Q  100 ttttatattcattaattgacgtaacaacacattattagttacatgtgtaaaataatt 156  Q
    ||||||||| |||||||||||||| || ||||||||   | ||||||||||||||||    
T  32650225 ttttatatttattaattgacgtaataatacattattgcatgcatgtgtaaaataatt 32650281  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 10172454 - 10172426
Alignment:
Q  106 attcattaattgacgtaacaacacattat 134  Q
    |||||||||||||||||||||||||||||    
T  10172454 attcattaattgacgtaacaacacattat 10172426  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 42109622 - 42109674
Alignment:
Q  104 atattcattaattgacgtaacaacacattattagttacatgtgtaaaataatt 156  Q
    ||||||||||||||||||||| |||||| | ||  | ||||||||||||||||    
T  42109622 atattcattaattgacgtaacgacacatcactaaatgcatgtgtaaaataatt 42109674  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 23540235 - 23540183
Alignment:
Q  104 atattcattaattgacgtaacaacacattattagttacatgtgtaaaataatt 156  Q
    |||||||||||| ||||| | ||||||| ||||| |||||||| |||||||||    
T  23540235 atattcattaatagacgtgataacacatcattagatacatgtgcaaaataatt 23540183  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 31426691 - 31426743
Alignment:
Q  104 atattcattaattgacgtaacaacacattattagttacatgtgtaaaataatt 156  Q
    ||||| || ||||||| | ||||||||||||||| || |||||||||||||||    
T  31426691 atatttatcaattgacattacaacacattattagatatatgtgtaaaataatt 31426743  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 33815792 - 33815848
Alignment:
Q  105 tattcattaattgacgtaacaacacattattagttacatgtgtaaaataattttata 161  Q
    |||||||||||||| || |||| |||||||| | | |||||||||||||||| ||||    
T  33815792 tattcattaattgatgtgacaatacattatttgatgcatgtgtaaaataattgtata 33815848  T

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