View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_low_84 (Length: 297)

Name: NF7721_low_84
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_low_84
NF7721_low_84
[»] chr7 (6 HSPs)
chr7 (61-294)||(12546233-12546466)
chr7 (98-179)||(9107298-9107378)
chr7 (98-187)||(13311968-13312056)
chr7 (35-187)||(22567909-22568063)
chr7 (94-138)||(9427962-9428006)
chr7 (14-59)||(28534287-28534332)
[»] chr1 (10 HSPs)
chr1 (205-297)||(16503278-16503370)
chr1 (206-297)||(24432383-24432474)
chr1 (94-184)||(49820265-49820355)
chr1 (101-198)||(17033706-17033803)
chr1 (100-192)||(50589072-50589164)
chr1 (102-194)||(38544605-38544696)
chr1 (206-293)||(29991240-29991327)
chr1 (98-194)||(19598758-19598854)
chr1 (101-194)||(42374286-42374379)
chr1 (98-190)||(46603510-46603599)
[»] chr6 (5 HSPs)
chr6 (206-297)||(5241570-5241661)
chr6 (206-297)||(17451432-17451523)
chr6 (102-194)||(33968482-33968574)
chr6 (206-297)||(14826155-14826246)
chr6 (150-194)||(13098486-13098530)
[»] chr3 (3 HSPs)
chr3 (206-297)||(53016844-53016935)
chr3 (75-200)||(25594371-25594496)
chr3 (127-194)||(47945828-47945895)
[»] chr2 (8 HSPs)
chr2 (34-194)||(22884930-22885092)
chr2 (97-194)||(33788494-33788591)
chr2 (101-162)||(24308593-24308654)
chr2 (96-187)||(27740104-27740195)
chr2 (100-194)||(25504773-25504867)
chr2 (98-192)||(4472046-4472140)
chr2 (98-187)||(43816319-43816408)
chr2 (125-187)||(3745464-3745526)
[»] chr4 (6 HSPs)
chr4 (98-194)||(12296297-12296393)
chr4 (206-297)||(20669773-20669864)
chr4 (98-187)||(46487400-46487489)
chr4 (100-194)||(21983687-21983780)
chr4 (98-194)||(28966989-28967085)
chr4 (125-194)||(46698674-46698743)
[»] chr8 (2 HSPs)
chr8 (102-194)||(17720573-17720665)
chr8 (100-194)||(15906809-15906903)
[»] scaffold1613 (1 HSPs)
scaffold1613 (102-194)||(884-975)
[»] chr5 (5 HSPs)
chr5 (98-194)||(39184048-39184144)
chr5 (100-194)||(8731040-8731134)
chr5 (102-180)||(24072134-24072212)
chr5 (98-185)||(27713200-27713288)
chr5 (96-194)||(23426455-23426553)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 61 - 294
Target Start/End: Original strand, 12546233 - 12546466
Alignment:
Q  61 tacaaaaaccaattaaaaacgaaatccaaaatgcccgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaag 160  Q
    ||||||||||| |||||||||||||||| ||  | ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12546233 tacaaaaaccacttaaaaacgaaatccataacactcgtcgccactacttatcccaaaataacacccctctaaatgaaacactccgtcgtcatcacctaag 12546332  T
Q  161 ctgaaccactattctaaagatcaatcaacttccatcacatgtcgacatgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaa 260  Q
    |||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12546333 ctgagccactattctaaagatcaatcaacttccaccacatctcgacatgttgtcttttggaaacatataatgttttcttccttgtcaaagtttaagtcaa 12546432  T
Q  261 ttccgtcaacttccactcctctttttactaaccc 294  Q
    |||| |||||||||||||||||||||||||||||    
T  12546433 ttccctcaacttccactcctctttttactaaccc 12546466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 9107378 - 9107298
Alignment:
Q  98 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaag 179  Q
    |||||||||||||||||||||||||  ||||||||||||||||| || || |||||||| ||| ||| ||||||||||||||    
T  9107378 tcgccactactcatcccaaaataactcccctctaaatgaaacac-ccatcctcatcaccaaagttgagccactattctaaag 9107298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 13312056 - 13311968
Alignment:
Q  98 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 187  Q
    |||||||||| || |||||||||| |  ||||||||||||||||| |||| || |||||||||||||  |||||||||||| ||||||||    
T  13312056 tcgccactacacaccccaaaataa-acacctctaaatgaaacacttcgtcctcgtcacctaagctgagacactattctaaatatcaatca 13311968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 187
Target Start/End: Original strand, 22567909 - 22568063
Alignment:
Q  35 acatcaccacctaaaacagactcttatacaaaa--accaattaaaaacgaaatccaaaatgcccgtcgccactactcatcccaaaataacatccctctaa 132  Q
    |||||||||||||||||||||||||  || |||  |||| | |||||||  ||||| ||    | || ||||||||||||| ||||||||| ||||  ||    
T  22567909 acatcaccacctaaaacagactctttcacgaaacaaccactgaaaaacggtatccataaccagcatcaccactactcatccaaaaataacaccccttaaa 22568008  T
Q  133 atgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 187  Q
    |||||||||   ||| || ||||| ||||||   |||||||||||||||||||||    
T  22568009 atgaaacaccatgtcctcgtcaccaaagctggggcactattctaaagatcaatca 22568063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 9427962 - 9428006
Alignment:
Q  94 cccgtcgccactactcatcccaaaataacatccctctaaatgaaa 138  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||||    
T  9427962 cccgtcgtcactactcatccctaaatagcatccctctaaatgaaa 9428006  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 28534287 - 28534332
Alignment:
Q  14 ggacatcacctaccaatatgaacatcaccacctaaaacagactctt 59  Q
    ||||| |||| ||||| || ||||||||||||||||||||||||||    
T  28534287 ggacaacacccaccaaaataaacatcaccacctaaaacagactctt 28534332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 16503278 - 16503370
Alignment:
Q  205 acatgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccctga 297  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  16503278 acatgttgtcttttgggaacatataatgttctcttccttgtcaaagtttaagtcaattccgtctacttcgactcctctctttactaaccctga 16503370  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 24432383 - 24432474
Alignment:
Q  206 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccctga 297  Q
    |||||||||||||||||||||| |||||| |||||||||||||| |||   ||||||||||| |||||||||||| | ||||||||||||||    
T  24432383 catgttgtcttttgggaacataaaatgttctcttccttgtcaaattttgtttcaattccgtccacttccactcctttatttactaaccctga 24432474  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 49820355 - 49820265
Alignment:
Q  94 cccgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaa 184  Q
    ||||||||||| || |||||||||||| || |||||||||||||||||  |  ||||||||| |||| ||| |||||||||||||||||||    
T  49820355 cccgtcgccaccacacatcccaaaatatcacccctctaaatgaaacacctctacgtcatcacttaagatgagccactattctaaagatcaa 49820265  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 17033803 - 17033706
Alignment:
Q  101 ccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttccatcac 198  Q
    |||||||| |||||||||||||| |||||| ||||||||||   ||| |||||||| ||| ||| ||| |||||||||||||||||| ||| ||||||    
T  17033803 ccactactaatcccaaaataacacccctctgaatgaaacaccatgtcctcatcaccaaagttgagccattattctaaagatcaatcagcttgcatcac 17033706  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 50589072 - 50589164
Alignment:
Q  100 gccactactcatcccaaaa-taacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttc 192  Q
    ||||||||||| ||||||| ||||  |||||||||||||||||||||||  ||||||||||| ||| | ||||||| |||||||||||||||||    
T  50589072 gccactactcaacccaaaaataacc-ccctctaaatgaaacactccgtctgcatcacctaagttgagctactattccaaagatcaatcaacttc 50589164  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 38544605 - 38544696
Alignment:
Q  102 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    |||||||||||||||  ||||| ||||||||||||||||| ||| | |||||| | || |||| |||||||||||||||||||||| ||||||    
T  38544605 cactactcatcccaacgtaacacccctctaaatgaaacac-ccgccctcatcagcaaaactgagccactattctaaagatcaatcatcttcca 38544696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 293
Target Start/End: Original strand, 29991240 - 29991327
Alignment:
Q  206 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaacc 293  Q
    |||||| ||||||| |||||||||||||| |||||||| ||||||||||| || || |  || |||||||||||| | ||||| ||||    
T  29991240 catgttatcttttgcgaacatataatgttctcttccttatcaaagtttaactcgatcctttctacttccactcctttctttacgaacc 29991327  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 19598854 - 19598758
Alignment:
Q  98 tcgccactactcatcccaaaataacatccctctaaatgaaacactc-cgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    ||||||||||||| |||||||||||  ||||||||| |||||||||  | ||| ||| | |||| ||| ||  |||||||||||||||||||||||||    
T  19598854 tcgccactactcaacccaaaataacccccctctaaaagaaacactctagccgt-atcccataagttgagccgttattctaaagatcaatcaacttcca 19598758  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 194
Target Start/End: Complemental strand, 42374379 - 42374286
Alignment:
Q  101 ccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    |||||||| | ||||| |||||| |||| |||| | ||| |  |||| |||||||| ||| ||| |||||||||||||||||||||| ||||||    
T  42374379 ccactactgaacccaagataacacccctataaaagcaactcctcgtcctcatcaccaaagttgagccactattctaaagatcaatcagcttcca 42374286  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 46603599 - 46603510
Alignment:
Q  98 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaact 190  Q
    |||||||||||| ||||||||||||| |||||||||| ||||| |  ||| | |||||| ||| ||| |||  |||||| |||||||||||||    
T  46603599 tcgccactactcttcccaaaataacacccctctaaat-aaacattatgtccttatcaccaaagttgagcca--attctacagatcaatcaact 46603510  T

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Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 206 - 297
Target Start/End: Complemental strand, 5241661 - 5241570
Alignment:
Q  206 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccctga 297  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  5241661 catgttgtcttttgggaacatataatgttctcttccttgtcaaagtttaagtcaatcccgtctacttccactcctctctttactaaccctga 5241570  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 17451432 - 17451523
Alignment:
Q  206 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccctga 297  Q
    |||||||||||||||||||||| |||||| |||||||||||||| |||   ||||||||||| |||||||||||| | ||||||||||||||    
T  17451432 catgttgtcttttgggaacataaaatgttctcttccttgtcaaattttgtttcaattccgtccacttccactcctttatttactaaccctga 17451523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 33968482 - 33968574
Alignment:
Q  102 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||| | ||| || ||| ||| |||||||||||||||||||||| ||||||    
T  33968482 cactactcatcccaaaataacacccctctaaatgaaacactttgtccttatcgccaaagttgagccactattctaaagatcaatcagcttcca 33968574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 14826155 - 14826246
Alignment:
Q  206 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccctga 297  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||| || || ||| |||| ||||| ||| |||| |||||    
T  14826155 catgttgtcttttgggaacacataatgttctcttctttgtcaaagtttacgtcaatcccatctactaccacccctctctttgctaatcctga 14826246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 13098486 - 13098530
Alignment:
Q  150 catcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||    
T  13098486 catcccctaagctgagccactattctaaagatcaatcatcttcca 13098530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 206 - 297
Target Start/End: Complemental strand, 53016935 - 53016844
Alignment:
Q  206 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccctga 297  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  53016935 catgttgtcttttgggaacatataatgttctcttccttgtcaaagtttaagtcaatcccgtctacttccactcctctctttactaaccctga 53016844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 25594371 - 25594496
Alignment:
Q  75 aaaaacgaaatccaaaatgcccgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattc 174  Q
    |||||||| |||||||   ||| ||||||||||||||||||| ||||||  |||||||||| ||||||||||| || || || ||| ||| |||||||||    
T  25594371 aaaaacgatatccaaaccacccatcgccactactcatcccaagataacactcctctaaatggaacactccgtcctcgtctccaaagttgagccactattc 25594470  T
Q  175 taaagatcaatcaacttccatcacat 200  Q
    ||||||||||||  |||||| |||||    
T  25594471 taaagatcaatccgcttccaccacat 25594496  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 47945895 - 47945828
Alignment:
Q  127 ctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    ||||||||||||||||||  |  |||| ||||| |||| ||||||||| |||||||||| ||||||||    
T  47945895 ctctaaatgaaacactccagctgcatcccctaaactgagccactattcaaaagatcaattaacttcca 47945828  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 194
Target Start/End: Original strand, 22884930 - 22885092
Alignment:
Q  34 aacatcaccacctaaaacagactcttatacaaaa--accaattaaaaacgaaatccaaaatgcccgtcgccactactcatcccaaaataacatccctcta 131  Q
    |||||||||||||||||||||||| |  || |||  |||| | | |||||||||||| ||  |||||||||||| ||  ||||||||||||| |||||||    
T  22884930 aacatcaccacctaaaacagactccttcacgaaacgaccactgacaaacgaaatccataacccccgtcgccactgcttgtcccaaaataacacccctcta 22885029  T
Q  132 aatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    |||||||||| ||||| |||||||||||   || ||||||||||| |||||||||||||||||    
T  22885030 aatgaaacacaccgtcctcatcacctaaaacgagccactattctatagatcaatcaacttcca 22885092  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 33788494 - 33788591
Alignment:
Q  97 gtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||| |||| |||||||||| ||||||    
T  33788494 gtcgccactactcgtcccaaaataacacccctctaaatgaaacaccccgtcctcatcacctaagctgagccactaatctatagatcaatcagcttcca 33788591  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 24308593 - 24308654
Alignment:
Q  101 ccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagct 162  Q
    ||||||||||||||||||||||| |||||||||| ||||||| | || ||||||||||||||    
T  24308593 ccactactcatcccaaaataacacccctctaaataaaacacttcatcctcatcacctaagct 24308654  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 27740195 - 27740104
Alignment:
Q  96 cgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 187  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||   ||| |||   |||||| ||| ||||||||| | ||||||||||    
T  27740195 cgtcgccactactcatcccagaataacacccctctaaatgaaacacattgtcctcaatgcctaagttgagccactattccatagatcaatca 27740104  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 25504773 - 25504867
Alignment:
Q  100 gccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    |||||||||||||||||||||||| ||||||||||||||||     || |||||||| ||| ||| || |||||||||| |||||| | ||||||    
T  25504773 gccactactcatcccaaaataacacccctctaaatgaaacatcatatcctcatcaccaaagttgagccgctattctaaatatcaattagcttcca 25504867  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 4472140 - 4472046
Alignment:
Q  98 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttc 192  Q
    |||||||||  || |||||||||||| |||||||||| ||  || ||  |||| |||| |||| ||| |||||||||||||||||||||| ||||    
T  4472140 tcgccactagacaacccaaaataacacccctctaaataaattacccctacgtcgtcacttaagttgagccactattctaaagatcaatcagcttc 4472046  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 43816319 - 43816408
Alignment:
Q  98 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 187  Q
    |||||||||||| |||| ||| ||||  ||||||||||||||||   ||| |||||||  || | || ||||||||||||||||||||||    
T  43816319 tcgccactactcctcccgaaaaaacactcctctaaatgaaacaccttgtcctcatcactaaaacagagccactattctaaagatcaatca 43816408  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 3745526 - 3745464
Alignment:
Q  125 ccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 187  Q
    |||||||||||||||||   ||| || ||||| | ||||| ||||||||||||||||||||||    
T  3745526 ccctctaaatgaaacaccttgtcctcgtcaccgatgctgagccactattctaaagatcaatca 3745464  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 12296393 - 12296297
Alignment:
Q  98 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||| |||||||| ||| || ||||||    
T  12296393 tcgccactactcatcccaaaataacacccctctaaatgaaacactccgtcctcatcacctaagttgagccactactctaaagaacaaccagcttcca 12296297  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 206 - 297
Target Start/End: Complemental strand, 20669864 - 20669773
Alignment:
Q  206 catgttgtcttttgggaacatataatgttttcttccttgtcaaagtttaagtcaattccgtcaacttccactcctctttttactaaccctga 297  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| || |  |||||||| ||||||||||||||    
T  20669864 catgttgtcttttgggaacatataatgttctcttccttatcaaagtttaagtcaatcccgtctacctatactcctctctttactaaccctga 20669773  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 46487489 - 46487400
Alignment:
Q  98 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatca 187  Q
    |||||||||||||||| ||||||| ||||||||||| ||||| ||||||| ||| ||||||| || | |||||||| |||||||||||||    
T  46487489 tcgccactactcatcctaaaataaaatccctctaaacgaaacgctccgtcctcaacacctaaactaagccactattataaagatcaatca 46487400  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 21983687 - 21983780
Alignment:
Q  100 gccactactcatcccaaaataacatccctctaaatgaaacactcc-gtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    ||||||||||| |||||||||||  || | ||||||||||||||| |||| |||| ||||||||||  ||||||||||||||||||||||||||||    
T  21983687 gccactactcaacccaaaataacc-ccttttaaatgaaacactccagtcg-catcccctaagctgagtcactattctaaagatcaatcaacttcca 21983780  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 28967085 - 28966989
Alignment:
Q  98 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||||  |  | || | |||| ||| ||||||||||| |||||||||| ||||||    
T  28967085 tcgccactactcagcccaaaataacctccctttaaatgaaacactccagccgcgtcccataagatgagccactattctagagatcaatcagcttcca 28966989  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 46698674 - 46698743
Alignment:
Q  125 ccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    |||||||||||||||||   ||| |||||||| |||| || |||||||||||||||| ||||| ||||||    
T  46698674 ccctctaaatgaaacaccttgtcctcatcaccaaagccgagccactattctaaagatgaatcagcttcca 46698743  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 17720573 - 17720665
Alignment:
Q  102 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    ||||||||| |||||||  | | ||||||||||||||||||||||| ||||||| |||  ||| |||||||||||||||||||||||||||||    
T  17720573 cactactcaccccaaaaataaacccctctaaatgaaacactccgtcctcatcacttaatttgagccactattctaaagatcaatcaacttcca 17720665  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 100 - 194
Target Start/End: Complemental strand, 15906903 - 15906809
Alignment:
Q  100 gccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    |||||||||||||||||||||||| | |||||||| |||||| | ||| |||||||||||| ||| | ||||||||| | |||||||| ||||||    
T  15906903 gccactactcatcccaaaataacacctctctaaataaaacacactgtcctcatcacctaagttgagctactattctataaatcaatcatcttcca 15906809  T

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Target: scaffold1613 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 884 - 975
Alignment:
Q  102 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    |||||||||||||||  ||||| ||||||||||||||||| ||| | |||||| | || |||| |||||||||||||||||||||| ||||||    
T  884 cactactcatcccaacgtaacacccctctaaatgaaacac-ccgccctcatcagcaaaactgagccactattctaaagatcaatcatcttcca 975  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 39184048 - 39184144
Alignment:
Q  98 tcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    ||||||||||| |||||||||||||| |||||| || ||| |||   ||| ||| |||| ||||||| ||||||||| |||||||||||| ||||||    
T  39184048 tcgccactacttatcccaaaataacacccctcttaacgaatcaccatgtcctcaacaccaaagctgagccactattcaaaagatcaatcagcttcca 39184144  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 194
Target Start/End: Complemental strand, 8731134 - 8731040
Alignment:
Q  100 gccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    |||||||||||||||||||||||| ||||||||||||||||     || |||||||| ||| ||| || |||||||||| |||||| | ||||||    
T  8731134 gccactactcatcccaaaataacacccctctaaatgaaacatcatatcctcatcaccaaagttgagccgctattctaaatatcaattagcttcca 8731040  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 24072134 - 24072212
Alignment:
Q  102 cactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaaga 180  Q
    ||||||||||||||||||||||| |||||||||||||||| || || || ||||  ||| |||  ||||||||||||||    
T  24072134 cactactcatcccaaaataacattcctctaaatgaaacaccccttcctcgtcacgaaagttgagtcactattctaaaga 24072212  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 27713288 - 27713200
Alignment:
Q  98 tcgccactactcatcccaaaataacatccc-tctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaat 185  Q
    ||||||||||||| |||||||||||  ||| |||||||||||||||||  |  |||| | |||| ||| ||||||||||||||||||||    
T  27713288 tcgccactactcaacccaaaataaccccccctctaaatgaaacactccagccgcatcccataagttgagccactattctaaagatcaat 27713200  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 23426553 - 23426455
Alignment:
Q  96 cgtcgccactactcatcccaaaataacatccctctaaatgaaacactccgtcgtcatcacctaagctgaaccactattctaaagatcaatcaacttcca 194  Q
    ||||||||||||||||||| | |||||| |||||||||||||||||   |||  || | |||||||||| |||| |||| |  ||||||||| ||||||    
T  23426553 cgtcgccactactcatccccagataacaaccctctaaatgaaacacattgtccgcaactcctaagctgagccacaattccatggatcaatcagcttcca 23426455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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