View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_86 (Length: 293)
Name: NF7721_low_86
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_86 |
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| [»] scaffold0244 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 824658 - 824782
Alignment:
| Q |
16 |
attaccaatatctgtgttaacaagtcatatgatgtattagtgtttcatagagttagattaaatgcataatacactgattgaatgggatggaaaacaaagc |
115 |
Q |
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| T |
824658 |
attaccaatatctgtgttaacaagtcatatgatgtattagtgtttcatagagttagattaaatgcataatacactgattgaatgggatggaaaacaaagc |
824757 |
T |
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| Q |
116 |
a----aaaatgtgatttatctgcgt |
136 |
Q |
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| T |
824758 |
aaattaaaatgtgatttatctgcgt |
824782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 182 - 277
Target Start/End: Original strand, 824782 - 824877
Alignment:
| Q |
182 |
taatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgacccacctggagctccactatgtattggatttggtag |
277 |
Q |
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| T |
824782 |
taatttaggtgaatcaaccacaacgcccttatgatgacattcctacctttcataatttgacccacctggagctccactatgtattggatttggtag |
824877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 1012268 - 1012172
Alignment:
| Q |
156 |
ctgatttgatggtgtgtctttctacataatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgacccacctggag |
252 |
Q |
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| T |
1012268 |
ctgaattgatagtgtgtctttttacattatttaggtgaatcggctacagctcccttatgatgacatttatatctttcataatttgacccacttggag |
1012172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 255
Target Start/End: Complemental strand, 989950 - 989851
Alignment:
| Q |
156 |
ctgatttgatggtgtgtctttctacataatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgacccacctggagctc |
255 |
Q |
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| T |
989950 |
ctgatttgatagtgtgtctttgtacataatttaggcaaataagctgcagcgcccttgtgttgacattcccatgtttcataatttgacccacttggagctc |
989851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 1043976 - 1044059
Alignment:
| Q |
159 |
atttgatggtgtgtctttctacataatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgac |
242 |
Q |
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| T |
1043976 |
atttgatagtgcatctttctacataatttaggtgaatcagttgcagcgtccttatgatgacatttatatctttcgtaatttgac |
1044059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 6133 - 6057
Alignment:
| Q |
182 |
taatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgacccacctggagctccac |
258 |
Q |
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| T |
6133 |
taatttaggtgaatcagccacaaggatcttatggtgatatttctatctttcataatttgacccacttggaactccac |
6057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 40640740 - 40640839
Alignment:
| Q |
98 |
tgggatggaaaacaaagcaaaaatgtgatttatctgcgttttattttgggaa-tttgctctgatttgatggtgtgtctttctacataatttaggtgaatc |
196 |
Q |
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| T |
40640740 |
tgggatggaaaacacagtagaaatgttattcatatgcattttcttttgagaacttttccctgatttgatggtgtgccattctaaataatttaagtgaatc |
40640839 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 32246796 - 32246865
Alignment:
| Q |
176 |
tctacataatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgaccca |
245 |
Q |
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| T |
32246796 |
tctacataattcaggcgaatcaacttcaacacccttacgatgatattcctatttttcataatttgaccca |
32246865 |
T |
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