View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_low_88 (Length: 290)

Name: NF7721_low_88
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_low_88
NF7721_low_88
[»] chr4 (5 HSPs)
chr4 (4-290)||(2887827-2888112)
chr4 (120-279)||(2896357-2896517)
chr4 (117-281)||(2878314-2878478)
chr4 (1-52)||(2878562-2878613)
chr4 (4-53)||(2896255-2896304)
[»] chr2 (3 HSPs)
chr2 (174-260)||(44222379-44222465)
chr2 (157-260)||(44210161-44210264)
chr2 (174-260)||(44233199-44233285)
[»] chr7 (4 HSPs)
chr7 (178-234)||(39573967-39574023)
chr7 (197-251)||(39339556-39339610)
chr7 (197-251)||(39354397-39354451)
chr7 (197-234)||(39588464-39588501)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 290
Target Start/End: Complemental strand, 2888112 - 2887827
Alignment:
Q  4 aattcttctataagttgcttgtttctcctgaacaatagtttataacagtgaggtctttttccaatatgatcatagttggtactataattattaatccata 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  2888112 aattcttctataagttgcttgtttctcctgaacaatagtttataacagtgaggtctttttccaatatgatcatagttggtacta-aattatgaatccata 2888014  T
Q  104 ttttcaaataaattttcttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctaaagtaagttcttgtgctgaactcgaaacttcca 203  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2888013 ttttcaaataaatttgcttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctagagtaagttcttgtgctgaactcgaaacttcca 2887914  T
Q  204 acatccaagttgctggattatagccatctttgattttactaaccccttcaatgctctaaacaacagaaaatattagaagataatctt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2887913 acatccaagttgctggattatagccatctttgattttactaaccccttcaatgctctaaacaacagaaaatattagaagataatctt 2887827  T

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Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 120 - 279
Target Start/End: Original strand, 2896357 - 2896517
Alignment:
Q  120 cttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctaaagtaagttcttgtgctgaactcgaaacttccaacatccaagttgctgg 219  Q
    |||||||||||||||||||||||||||||  || |||||||||||  ||||||||| |||||||||||||||| | ||||||||||||||||||||||||    
T  2896357 cttacctgtacaactcagaatttttgtatatatcatgaaaatcaacacctaaagtatgttcttgtgctgaacttgtaacttccaacatccaagttgctgg 2896456  T
Q  220 attatagccatctttgattttactaaccccttcaatgctct-aaacaacagaaaatattag 279  Q
    ||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||    
T  2896457 attatagccatctttaattttactaaccccttcgatgctctaaaacaacagaaaatattag 2896517  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 281
Target Start/End: Complemental strand, 2878478 - 2878314
Alignment:
Q  117 tttcttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctaaagtaagttcttgtgctgaactcgaaacttccaacatccaagttgc 216  Q
    |||||||||| || | ||||||||||||||||   | ||||||||||   ||||| | || ||||||||||| |||||  ||||| |||||||| |||||    
T  2878478 tttcttacctatatagctcagaatttttgtatatctcatgaaaatcagcacctaatgcaacttcttgtgctggactcgtcacttctaacatccatgttgc 2878379  T
Q  217 tggattatagccatctttgattttactaaccccttcaatgctctaaacaacagaaaatattagaa 281  Q
    ||| ||||| ||||| || |||||||| || |||||||| ||||| |||| ||||||||| ||||    
T  2878378 tgggttatatccatcgtttattttacttactccttcaatactctagacaatagaaaatataagaa 2878314  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2878613 - 2878562
Alignment:
Q  1 cccaattcttctataagttgcttgtttctcctgaacaatagtttataacagt 52  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  2878613 cccaattcttctataagttgcttatttctcctgaacaatagtgtataacagt 2878562  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 2896255 - 2896304
Alignment:
Q  4 aattcttctataagttgcttgtttctcctgaacaatagtttataacagtg 53  Q
    |||||| |||||||||||||||||||||| || ||||||||||| |||||    
T  2896255 aattctactataagttgcttgtttctcctaaagaatagtttatatcagtg 2896304  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 44222379 - 44222465
Alignment:
Q  174 taagttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatctttgattttactaaccccttcaatgctct 260  Q
    ||||||||||||||| | | | ||||||||||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||||    
T  44222379 taagttcttgtgctgtagttgtaacttccaacatccatgttgctgggttatatccatctttgattttactaactccgtcaatgctct 44222465  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 44210161 - 44210264
Alignment:
Q  157 aaaatcaattcctaaagtaagttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatctttgattttactaaccccttcaatg 256  Q
    ||||||||  || ||| ||||||||||||| | | | | ||||||||||||||| |||||||| ||||| || |||||||||||||| || || ||||||    
T  44210161 aaaatcaacacccaaattaagttcttgtgcggtagttgtaacttccaacatccatgttgctgggttatatccgtctttgattttactcactccgtcaatg 44210260  T
Q  257 ctct 260  Q
    ||||    
T  44210261 ctct 44210264  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 44233199 - 44233285
Alignment:
Q  174 taagttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatctttgattttactaaccccttcaatgctct 260  Q
    ||||||||||||| | | | | ||||||||||||||| |||||||| ||||| || |||||||||||||| || || ||||||||||    
T  44233199 taagttcttgtgcggtagttgtaacttccaacatccatgttgctgggttatatccgtctttgattttactcactccgtcaatgctct 44233285  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 39573967 - 39574023
Alignment:
Q  178 ttcttgtgctgaactcgaaacttccaacatccaagttgctggattatagccatcttt 234  Q
    ||||| |||||| || | ||||||||||||||||||||||||||| |||||||||||    
T  39573967 ttcttttgctgagctagtaacttccaacatccaagttgctggattgtagccatcttt 39574023  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 39339610 - 39339556
Alignment:
Q  197 acttccaacatccaagttgctggattatagccatctttgattttactaacccctt 251  Q
    |||||||||||||| |||||||||||||| || |||||||| || ||||| ||||    
T  39339610 acttccaacatccatgttgctggattataaccgtctttgatcttgctaacacctt 39339556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 39354451 - 39354397
Alignment:
Q  197 acttccaacatccaagttgctggattatagccatctttgattttactaacccctt 251  Q
    |||||||||||||| |||||||||||||| || |||||||| || ||||| ||||    
T  39354451 acttccaacatccatgttgctggattataaccgtctttgatctttctaacacctt 39354397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 39588464 - 39588501
Alignment:
Q  197 acttccaacatccaagttgctggattatagccatcttt 234  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  39588464 acttccaaaatccaagttgctggattatatccatcttt 39588501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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