View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_9 (Length: 597)
Name: NF7721_low_9
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Original strand, 37492582 - 37493162
Alignment:
| Q |
1 |
catcgggatatataagtgcttgggtgtccataaattatttttcttctccttattggtgggttatatgtgggtggaggtacggaaatctttatatatcccg |
100 |
Q |
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| T |
37492582 |
catcgggatatataagtgcttgggtgtccataaattatttttcttctccttattggtgggttatatgtgggtggaggtacggaaatctttatatatcccg |
37492681 |
T |
|
| Q |
101 |
aatctttagcttcttaattaagccgaaatataatcccttaaaaatgatcaaaagaagaagacatcctaatcatttga-tattaattattttcagttataa |
199 |
Q |
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| T |
37492682 |
aatctttagcttcttaattaagccgaaatataatcccttaaaaatgatcaaaagaagaagacatcctaatcatttgaatattaattattttcagttataa |
37492781 |
T |
|
| Q |
200 |
gtaatccagcgtgctccaggaggtaccacaaacgaaaagaaatctcttaa----agatgtaaaatgagaaaagcagggacaagaaataaaactatatcaa |
295 |
Q |
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| T |
37492782 |
gtaatccagcgtgctccagg---taccacaaacgagaagaaatctcttaattaaagatgtaaaatgagaaaagcagggacaagaaataaaactatatcaa |
37492878 |
T |
|
| Q |
296 |
aaaagcatatgcatgagttgtttcagaatctggaaacttggttgcattagattaaagcttttggttggcaccccaaaaatgctgaatttgattggctaac |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37492879 |
aaaagcatatgcatgagttgtttcagaatctggaaacttggttgcattagattaaagcttttggttggcaccccaaaaatgctgaatttgattggctaac |
37492978 |
T |
|
| Q |
396 |
ttcaaacaattcgacacttgcctttctgatccctaaatttgtggatttcttttgaacaagtatacatgaggtcaaccgtacaatattnnnnnnnnnnnnn |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37492979 |
ttcaaacaattcgacacttgcctttctgatccctaaatttgtggatttcttttgaacaagtatacatgaggtcaaccgtacaatattaaaaaacaaaaaa |
37493078 |
T |
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| Q |
496 |
gaaaggaacataatagaagggacaagaattgttattatcaatatcaatacataaataaagagaaaagaattgttaccaatcatc |
579 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
37493079 |
gaaaggaacataatagaagggacaagaattgttattatcaatatcaatacatagataaagagaaaataattgttaccaatcatc |
37493162 |
T |
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