View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_low_96 (Length: 259)

Name: NF7721_low_96
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_low_96
NF7721_low_96
[»] chr2 (3 HSPs)
chr2 (71-242)||(7384817-7384988)
chr2 (71-258)||(7395702-7395889)
chr2 (114-258)||(11312052-11312206)
[»] chr4 (2 HSPs)
chr4 (71-258)||(28874100-28874287)
chr4 (177-242)||(14000019-14000084)
[»] chr8 (5 HSPs)
chr8 (78-258)||(10733940-10734119)
chr8 (128-258)||(10738972-10739102)
chr8 (199-258)||(17909750-17909809)
chr8 (92-177)||(17702998-17703083)
chr8 (177-242)||(30735285-30735350)
[»] chr1 (3 HSPs)
chr1 (78-258)||(26023376-26023566)
chr1 (175-258)||(26028693-26028776)
chr1 (197-258)||(18188307-18188364)
[»] chr5 (4 HSPs)
chr5 (71-258)||(28663643-28663841)
chr5 (91-258)||(19699347-19699528)
chr5 (197-258)||(17935464-17935525)
chr5 (222-258)||(17945752-17945788)
[»] scaffold0248 (1 HSPs)
scaffold0248 (114-258)||(16080-16234)
[»] chr6 (6 HSPs)
chr6 (114-258)||(23600012-23600169)
chr6 (114-245)||(17190645-17190786)
chr6 (71-179)||(17275109-17275218)
chr6 (114-179)||(17270224-17270289)
chr6 (93-179)||(11302235-11302321)
chr6 (222-258)||(11302144-11302180)
[»] chr3 (2 HSPs)
chr3 (71-230)||(38419796-38419958)
chr3 (114-245)||(7117154-7117295)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 7384817 - 7384988
Alignment:
Q  71 tgtattgcttctcaagtatgtctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaa 170  Q
    |||||||||||||||||||||||||| ||| |||| || ||  ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  7384817 tgtattgcttctcaagtatgtctttatatggtaatgtaggtcctatttatagaatacaaaagttgtaactttcaattacatgaagagccatgagactaaa 7384916  T
Q  171 tatcaataaagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcat 242  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7384917 tatcaataaagtcatttagtcatattagttaagaaatatagaaggtctagggacaatggacatccacatcat 7384988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 71 - 258
Target Start/End: Original strand, 7395702 - 7395889
Alignment:
Q  71 tgtattgcttctcaagtatgtctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaa 170  Q
    ||||||||||||||| ||||||||||||||| ||| || ||  ||||||||| ||| ||||||||   |||| ||||||||||||||| |||||||||||    
T  7395702 tgtattgcttctcaattatgtctttacatgacaatgtaggtcctatttataggatacaaaagttgcgtcttctaattacatgaagagctatgagactaaa 7395801  T
Q  171 tatcaataaagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 258  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7395802 tatcaataaagtcatttaatcatagtagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 7395889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 114 - 258
Target Start/End: Complemental strand, 11312206 - 11312052
Alignment:
Q  114 tatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaata----------aagtcatttagtcatattagttaag 203  Q
    ||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||| ||||||          |||| ||| ||||||| ||||||||    
T  11312206 tatttataggatacaaaagttgtaccttacaattacatgaagagccatgagactaaatgtcaataggaataaataaagttattaagtcatagtagttaag 11312107  T
Q  204 gaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 258  Q
    | ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11312106 ggatatagaaggtctagggacaatgtacatccacatcatattttcatttattcat 11312052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 71 - 258
Target Start/End: Complemental strand, 28874287 - 28874100
Alignment:
Q  71 tgtattgcttctcaagtatgtctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaa 170  Q
    |||||| |||| ||||| |||||||| |||| | | || ||  ||||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||    
T  28874287 tgtattacttcacaagtgtgtctttatatgacagtgtaggtcctatttataggatacaaaagttgtaacttacaattacatgaagaaccatgagactaaa 28874188  T
Q  171 tatcaataaagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 258  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28874187 tatcaataaagtcatttagtcataatagttaagaaatatagaaggtctagggataatggacatccacatcatattttcatttattcat 28874100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 14000084 - 14000019
Alignment:
Q  177 taaagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcat 242  Q
    ||||| |||||| |||||| ||||| || |||||||| |  |||| ||||||||||||||||||||    
T  14000084 taaagccatttactcatataagttagggcatatagaaagcttaggaacaatggacatccacatcat 14000019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 10734119 - 10733940
Alignment:
Q  78 cttctcaagtatgtctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaat 177  Q
    |||| ||||||| ||||||||||| ||| || ||  ||||||||| ||| ||| |||||||||| ||||||||||||||| ||||||| |||||||||||    
T  10734119 cttcacaagtatatctttacatgacaatgtaggtcctatttataggatacaaa-gttgtaacttacaattacatgaagagtcatgagattaaatatcaat 10734021  T
Q  178 aaagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 258  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10734020 aaagtcatttagtcatagtagttaaagaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 10733940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 128 - 258
Target Start/End: Complemental strand, 10739102 - 10738972
Alignment:
Q  128 aaaagttgtaacttccaattacatgaagagccatgagactaaatatcaataaagtcatttagtcatattagttaaggaatatagaaggtctagggacaat 227  Q
    |||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  10739102 aaaagttgtaacttacatttacatgaagagtcatgagactaaatatcaataaagtcatttagtcatagtagttaaagaatatagaaggtctagggacaat 10739003  T
Q  228 ggacatccacatcatattttcatttattcat 258  Q
    |||||||||||| ||||||||||||||||||    
T  10739002 ggacatccacataatattttcatttattcat 10738972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 17909809 - 17909750
Alignment:
Q  199 ttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 258  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17909809 ttaaggaaaatagaagggctagggacaatggacatccacatcatattttcatttattcat 17909750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 17703083 - 17702998
Alignment:
Q  92 ctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaat 177  Q
    |||||||||| ||| || ||  ||||||||| ||| ||||||| |||||| ||| |||    ||||||||||||||||||||||||    
T  17703083 ctttacatgacaatgtatgtcctatttataggatacaaaagttttaacttacaagtaccctcagagccatgagactaaatatcaat 17702998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 30735285 - 30735350
Alignment:
Q  177 taaagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcat 242  Q
    ||||| |||||| |||||  ||||| ||||||||||| |  |||| ||||||||||||||||||||    
T  30735285 taaagccatttactcataggagttagggaatatagaaagcttaggaacaatggacatccacatcat 30735350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 26023566 - 26023376
Alignment:
Q  78 cttctcaagtatgtctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaat 177  Q
    ||||||| |||||||||||||||| ||| || ||| ||||||||| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  26023566 cttctcatgtatgtctttacatgacaatgtaggttctatttataggatacaaaagttgtaacttacaattatatgaagagccatgagactaaatatcaat 26023467  T
Q  178 a----------aagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 258  Q
    |          |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26023466 aggaataaataaagtcatttagtcatagtagttaaggaatatagaaggtctagagacaatggacatccacatcatattttcatttattcat 26023376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 26028776 - 26028693
Alignment:
Q  175 aataaagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 258  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26028776 aataaagtcatttagtcataatagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 26028693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 18188307 - 18188364
Alignment:
Q  197 agttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 258  Q
    ||||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||    
T  18188307 agttaaggaatatagaaggtctagggacaatg----tccccatcatattttcatttattcat 18188364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 71 - 258
Target Start/End: Original strand, 28663643 - 28663841
Alignment:
Q  71 tgtattgcttctcaagtatgt-ctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaa 169  Q
    ||||||| ||||||||| ||| |||||||||| ||| ||  |  ||||||||| ||| ||||||||||||||  ||||||||||||||||||||||||||    
T  28663643 tgtattgtttctcaagtgtgttctttacatgacaatgtagatcctatttataggatacaaaagttgtaacttataattacatgaagagccatgagactaa 28663742  T
Q  170 atatcaata----------aagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 258  Q
    |||||||||          |||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  28663743 atatcaataggaataaataaagtcatttagtcacaatagttaaggaatatagaaggtctggggacaatggacatccaaatcatattttcatttattcat 28663841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 91 - 258
Target Start/End: Complemental strand, 19699528 - 19699347
Alignment:
Q  91 tctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagag----ccatgagactaaatatcaata-------- 178  Q
    ||||||||||| ||| || ||  ||||||||| ||| |||||||||||||| || ||||||||||||    |||||||||||||||||||||            
T  19699528 tctttacatgacaatgtatgtcatatttataggatacaaaagttgtaacttacagttacatgaagagtcagccatgagactaaatatcaataggaataaa 19699429  T
Q  179 --aagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 258  Q
      ||| |||||| ||||| ||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||||||    
T  19699428 taaaggcatttaatcatagtagttaagggatatataaggtctagggacaatggtcatccacatcatatttgcatttattcat 19699347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 17935525 - 17935464
Alignment:
Q  197 agttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 258  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||    
T  17935525 agttaaggaatatagaaggtctagaaacaatggacatccgcatcatattttcatttattcat 17935464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 17945788 - 17945752
Alignment:
Q  222 gacaatggacatccacatcatattttcatttattcat 258  Q
    ||||||||||||||||||||||||||| |||||||||    
T  17945788 gacaatggacatccacatcatattttcctttattcat 17945752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 114 - 258
Target Start/End: Complemental strand, 16234 - 16080
Alignment:
Q  114 tatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaata----------aagtcatttagtcatattagttaag 203  Q
    ||||||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||          |||||||||||||||| |||||||     
T  16234 tatttataggatacaaaagttgtaacttacaattacatgaagagccatgagagtaaatatcaatatgaataaataaagtcatttagtcatagtagttaaa 16135  T
Q  204 gaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 258  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  16134 gaatatagaaggtatagagacaatgtacatccacatcatattttcatttattcat 16080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 23600012 - 23600169
Alignment:
Q  114 tatttatagaatataaaagttgtaacttccaattacatgaagagccatgaga---ctaaatatcaata----------aagtcatttagtcatattagtt 200  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| |||||||   |||||||||||||          |||||||||||||||| |||||    
T  23600012 tatttataggatataaaagttgtaacttacaattacatgaagagtcatgagagtactaaatatcaataggaataaacaaagtcatttagtcatagtagtt 23600111  T
Q  201 aaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 258  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  23600112 aagggatatagaaggtttagggacaatggacatctacatcatattttcatttattcat 23600169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 245
Target Start/End: Complemental strand, 17190786 - 17190645
Alignment:
Q  114 tatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatca----------ataaagtcatttagtcatattagttaag 203  Q
    ||||||||| ||  |||||||||||||| ||| || |||||||| |||| || |||||||||          ||||||||||||||||||| ||||||||    
T  17190786 tatttataggatgcaaaagttgtaacttacaagtatatgaagagtcatgggattaaatatcaataagaatgaataaagtcatttagtcatagtagttaag 17190687  T
Q  204 gaatatagaaggtctagggacaatggacatccacatcatatt 245  Q
    | |||||||| ||||||||| |||||||||||||||||||||    
T  17190686 ggatatagaaagtctagggaaaatggacatccacatcatatt 17190645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 17275109 - 17275218
Alignment:
Q  71 tgtattgcttctcaagtatgt-ctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaa 169  Q
    ||||||||||||||||| ||| |||||||||  ||| || ||  ||||||||  ||| |||||||||||||| ||||||||||||||| |||||||||||    
T  17275109 tgtattgcttctcaagtgtgttctttacatggcaatgtaggtcctatttatatgatacaaaagttgtaacttacaattacatgaagagtcatgagactaa 17275208  T
Q  170 atatcaataa 179  Q
    ||||||||||    
T  17275209 atatcaataa 17275218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 17270224 - 17270289
Alignment:
Q  114 tatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaataa 179  Q
    ||||||||| ||| |||||||||||||| ||||||||||||||| ||| ||||||||| |||||||    
T  17270224 tatttataggatacaaaagttgtaacttacaattacatgaagagtcataagactaaatttcaataa 17270289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 11302321 - 11302235
Alignment:
Q  93 tttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaataa 179  Q
    |||||||| |||| |||||  ||||||||| ||| ||||||||||| || |||||||||||||||| |||| |  ||||||||||||    
T  11302321 tttacatggtaatgtaagtcctatttataggatacaaaagttgtaatttacaattacatgaagagctatgaaataaaatatcaataa 11302235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 11302180 - 11302144
Alignment:
Q  222 gacaatggacatccacatcatattttcatttattcat 258  Q
    ||||||| |||||||||||||||||||||||||||||    
T  11302180 gacaatgaacatccacatcatattttcatttattcat 11302144  T

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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 71 - 230
Target Start/End: Complemental strand, 38419958 - 38419796
Alignment:
Q  71 tgtattgcttctcaagtatgtctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaa 170  Q
    |||||| |||| ||| | ||||||||||||| ||| ||| |  ||||||||  ||| |||||||||||||| |||||||||||||| |||||||||||||    
T  38419958 tgtattacttcacaaatgtgtctttacatgacaatgtaactcctatttatacgatacaaaagttgtaacttacaattacatgaagaaccatgagactaaa 38419859  T
Q  171 tatcaataaagtcatttagtcatattag---ttaaggaatatagaaggtctagggacaatgga 230  Q
    |||||||||| ||||||| ||||| |||   |||| ||||||||||| |||||| ||||||||    
T  38419858 tatcaataaattcatttaatcatactagtaattaaagaatatagaagatctaggaacaatgga 38419796  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 7117154 - 7117295
Alignment:
Q  114 tatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaataa----------agtcatttagtcatattagttaag 203  Q
    ||||||||| ||| |||||||||||||| ||| ||||||||||  |||||||||||||||||||||          || ||||||||||||  | |||||    
T  7117154 tatttataggatacaaaagttgtaacttacaagtacatgaagaatcatgagactaaatatcaataagaatgaataaagacatttagtcatagaaattaag 7117253  T
Q  204 gaatatagaaggtctagggacaatggacatccacatcatatt 245  Q
    | ||||| |||||||||||| |||||||||||||||||||||    
T  7117254 ggatataaaaggtctagggaaaatggacatccacatcatatt 7117295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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