View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7721_low_97 (Length: 258)

Name: NF7721_low_97
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7721_low_97
NF7721_low_97
[»] chr4 (3 HSPs)
chr4 (110-258)||(35155268-35155418)
chr4 (110-193)||(35162356-35162439)
chr4 (132-186)||(15555936-15555990)
[»] chr8 (2 HSPs)
chr8 (110-258)||(9692843-9692993)
chr8 (110-191)||(9675821-9675902)
[»] chr3 (16 HSPs)
chr3 (113-187)||(46549115-46549189)
chr3 (132-186)||(51943814-51943868)
chr3 (133-186)||(5156169-5156222)
chr3 (132-186)||(46483972-46484026)
chr3 (133-191)||(46526573-46526630)
chr3 (133-186)||(5160199-5160251)
chr3 (137-186)||(46538909-46538958)
chr3 (133-193)||(45902871-45902931)
chr3 (132-186)||(46490633-46490687)
chr3 (132-180)||(46479720-46479768)
chr3 (131-186)||(46554333-46554388)
chr3 (132-186)||(16025405-16025459)
chr3 (132-186)||(46473853-46473907)
chr3 (132-186)||(46544381-46544435)
chr3 (132-185)||(46531844-46531897)
chr3 (135-168)||(47414343-47414376)
[»] chr7 (4 HSPs)
chr7 (113-186)||(17708197-17708270)
chr7 (113-186)||(17718021-17718094)
chr7 (132-186)||(17735851-17735905)
chr7 (113-186)||(17745032-17745105)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 110 - 258
Target Start/End: Complemental strand, 35155418 - 35155268
Alignment:
Q  110 gctctgataaactgatcaaggctgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcatat--ttttgtcatatatttaggaa 207  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| || ||| ||    
T  35155418 gctctaataaattgatcaaggctgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcatatttttttgtcatacatctagaaa 35155319  T
Q  208 acggttgaatccatgctcctttaaaatacagtgcattaacaaggacgagtc 258  Q
    ||||||||||||| |||||||||||||||||||||||| ||| || |||||    
T  35155318 acggttgaatccaagctcctttaaaatacagtgcattagcaaagatgagtc 35155268  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 35162439 - 35162356
Alignment:
Q  110 gctctgataaactgatcaaggctgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcatatttttgt 193  Q
    ||||| ||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  35162439 gctctaataaactgatcaaggttggtagtcatgaagggaaccttgactgagcttccattcagaaggtgaaaatcatagttttgt 35162356  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 15555990 - 15555936
Alignment:
Q  132 tgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    ||||| |||| || |||||||||| |||||| ||||| |||||||||||||||||    
T  15555990 tgctgctcataaacggaaccttgagtgagctaccattgagaaggtgaaaatcata 15555936  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 258
Target Start/End: Original strand, 9692843 - 9692993
Alignment:
Q  110 gctctgataaactgatcaaggctgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcatatt--tttgtcatatatttaggaa 207  Q
    ||||| ||||||||||||||| ||||| |||| || |||||||||||||||||||||||| ||||||||||||||||||   ||||| |  |   |||||    
T  9692843 gctctaataaactgatcaaggttgctgctcataaaaggaaccttgactgagctgccattcggaaggtgaaaatcatattcgcttgtcctccaagcaggaa 9692942  T
Q  208 acggttgaatccatgctcctttaaaatacagtgcattaacaaggacgagtc 258  Q
    | || | | ||||||||||||||||||||| ||||||| ||| || |||||    
T  9692943 aaggattactccatgctcctttaaaatacaatgcattagcaaagatgagtc 9692993  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 9675821 - 9675902
Alignment:
Q  110 gctctgataaactgatcaaggctgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcatattttt 191  Q
    ||||| ||||||||||||||| || || |||| |||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  9675821 gctctaataaactgatcaaggttggtgctcataaagggaactttgactgagctgccattcagaaggtgaaaatcatagtttt 9675902  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 46549115 - 46549189
Alignment:
Q  113 ctgataaactgatcaaggctgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcatat 187  Q
    |||||||||||||||   |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  46549115 ctgataaactgatcattcctgctggttatgaagggaaccttgaccgagctgccattgagaaggtgaaaatcatat 46549189  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 51943868 - 51943814
Alignment:
Q  132 tgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  51943868 tgctggtcatgaagggaaccttgactgagctaccatttagaaggtgaaaatcata 51943814  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 5156222 - 5156169
Alignment:
Q  133 gctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  5156222 gctggtcatgaagggaaccttgaccgagctgccattcaaaaggtgaaaatcata 5156169  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 46484026 - 46483972
Alignment:
Q  132 tgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  46484026 tgctagtcataaagggaaccttgactgagctgccattgagaaggtgaaaatcata 46483972  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 46526573 - 46526630
Alignment:
Q  133 gctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcatattttt 191  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||    
T  46526573 gctggtcatgaagggaaccttgactgagctgccattta-aaggtgaaaatcatagtttt 46526630  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 5160251 - 5160199
Alignment:
Q  133 gctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  5160251 gctggtcatgaagggaaccttgactgagct-ccattcaaaaggtgaaaatcata 5160199  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 46538958 - 46538909
Alignment:
Q  137 gtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  46538958 gtcatgaagggaaccttgactgagctgccattaagaaggttaaaatcata 46538909  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 45902931 - 45902871
Alignment:
Q  133 gctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcatatttttgt 193  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||| ||||||    
T  45902931 gctggtcatgaagggaaccttgactgagctaccatttagaaggtaaaaattatagttttgt 45902871  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 46490687 - 46490633
Alignment:
Q  132 tgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    |||| ||||||||||||||||| | |||||||||||||| |||||||||||||||    
T  46490687 tgctagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcata 46490633  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 46479768 - 46479720
Alignment:
Q  132 tgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaa 180  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||||||||    
T  46479768 tgctggtcatgaagggaaccttgactgggctaccattcaaaaggtgaaa 46479720  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 46554333 - 46554388
Alignment:
Q  131 ctgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    ||||||||| ||||||||||||||| |||||| ||||  |||||||||||||||||    
T  46554333 ctgctggtcttgaagggaaccttgaatgagctaccatcaagaaggtgaaaatcata 46554388  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 16025459 - 16025405
Alignment:
Q  132 tgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    ||||||||||||||||||| |||| |  | |||||||||||| ||||||||||||    
T  16025459 tgctggtcatgaagggaactttgattacgttgccattcagaatgtgaaaatcata 16025405  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 46473907 - 46473853
Alignment:
Q  132 tgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    |||| ||||| |||| |||||| |||||||||||||| ||||||| |||||||||    
T  46473907 tgctagtcataaaggaaaccttaactgagctgccattgagaaggtaaaaatcata 46473853  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 46544435 - 46544381
Alignment:
Q  132 tgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    |||| |||||||| ||||||||||||  ||||||||| ||||||| |||||||||    
T  46544435 tgcttgtcatgaaaggaaccttgacttggctgccattgagaaggttaaaatcata 46544381  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 46531897 - 46531844
Alignment:
Q  132 tgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcat 185  Q
    |||| ||||||||||||||||| | ||||||||||   ||||||||||||||||    
T  46531897 tgctagtcatgaagggaaccttaattgagctgccaccgagaaggtgaaaatcat 46531844  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 47414343 - 47414376
Alignment:
Q  135 tggtcatgaagggaaccttgactgagctgccatt 168  Q
    |||||||||||||||||||||||||||| |||||    
T  47414343 tggtcatgaagggaaccttgactgagcttccatt 47414376  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 17708270 - 17708197
Alignment:
Q  113 ctgataaactgatcaaggctgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    |||||||||||||||    |||||||||| ||||||||||| |||||  ||||||| ||||||| |||||||||    
T  17708270 ctgataaactgatcattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcata 17708197  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 17718094 - 17718021
Alignment:
Q  113 ctgataaactgatcaaggctgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    |||||||||||||||    |||||||||| ||||||||||| |||||  ||||||| ||||||| |||||||||    
T  17718094 ctgataaactgatcattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcata 17718021  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 17735905 - 17735851
Alignment:
Q  132 tgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    |||||||||| ||||||||||| |||||  ||||||| ||||||| |||||||||    
T  17735905 tgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcata 17735851  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 17745105 - 17745032
Alignment:
Q  113 ctgataaactgatcaaggctgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 186  Q
    |||||||||||||||    |||||||||| ||||||||||| |||||  |||| || ||||||| |||||||||    
T  17745105 ctgataaactgatcattcttgctggtcataaagggaacctttactgacttgccgttaagaaggtcaaaatcata 17745032  T

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