View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7721_low_99 (Length: 256)
Name: NF7721_low_99
Description: NF7721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7721_low_99 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 2436555 - 2436789
Alignment:
| Q |
15 |
agattaggatgtatgctttttgttttctagggttggctttggcctctattgttttcaatatgcttgaacagtatagctttgcttacatgggagagtactt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2436555 |
agattaggatgtatgctttttgttttctagggttggctttggcctctattgttttcaatatgcttgaacagtatagctttgcttacatgggagagtactt |
2436654 |
T |
|
| Q |
115 |
gactaagaggattagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaggatcaaaattctacgggtgttatttgctctaga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2436655 |
gactaagaggattagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaggatcaaaattctacgggtgttatttgctctaga |
2436754 |
T |
|
| Q |
215 |
cttgccaaagaagccaacgtggtatgttcttctca |
249 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
2436755 |
cttgccaaagaagccaacgtggtatgttcttctca |
2436789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 2642676 - 2642451
Alignment:
| Q |
17 |
attaggatgtatgctttttgttttctagggttggctttggcctctattgttttcaatatgcttgaacagtatagctttgcttacatgggagagtacttga |
116 |
Q |
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|||||||| ||||| ||||||||||||||||||||| | ||| || ||| | ||| ||||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
2642676 |
attaggatctatgcattttgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacattatagctttgcttacatgggagaatacttga |
2642577 |
T |
|
| Q |
117 |
ctaagaggattagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaggatcaaaattctacgggtgttatttgctctagact |
216 |
Q |
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|||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||| |
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| T |
2642576 |
ctaagagggttagagaacgaatgttttccaagatactcacatttgaagttggttggtttgatgaagatcaaaattctacaggtgttgtttgctctagact |
2642477 |
T |
|
| Q |
217 |
tgccaaagaagccaacgtggtatgtt |
242 |
Q |
| |
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|||||||||||| || ||||||||| |
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| T |
2642476 |
tgccaaagaagctaatatggtatgtt |
2642451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 2621969 - 2622193
Alignment:
| Q |
17 |
attaggatgtatgctttttgttttctagggttggctttggcctctattgttttcaatatgcttgaacagtatagctttgcttacatgggagagtacttga |
116 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||| | ||| || ||| | ||| ||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
2621969 |
attaggatttatgcactttgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacattatagctttgcttacatgggagagtacttga |
2622068 |
T |
|
| Q |
117 |
ctaagaggattagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaggatcaaaattctacgggtgttatttgctctagact |
216 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||| |
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| T |
2622069 |
ctaagaggattagagaaaagatgttttctaagatactcacatttgaagttggttggtttgatgaagatcaaaattctacaggttctgtttgctctagact |
2622168 |
T |
|
| Q |
217 |
tgccaaagaagccaacgtggtatgt |
241 |
Q |
| |
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||||||||||||||| ||||||||| |
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| T |
2622169 |
tgccaaagaagccaatgtggtatgt |
2622193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 2590414 - 2590638
Alignment:
| Q |
17 |
attaggatgtatgctttttgttttctagggttggctttggcctctattgttttcaatatgcttgaacagtatagctttgcttacatgggagagtacttga |
116 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| | ||| || ||| | ||| | ||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
2590414 |
attaggatttatgcactttgttttctagggttggctgttatctcaatggttgttaatgtacttcaacattatagctttgcttacatgggagaatacttga |
2590513 |
T |
|
| Q |
117 |
ctaagaggattagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaggatcaaaattctacgggtgttatttgctctagact |
216 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||| |
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| T |
2590514 |
ctaagagggttagagaacgaatgttttccaagatactcacatttgaagttggttggtttgatgaagatcaaaattctacaggttctgtttgctctagact |
2590613 |
T |
|
| Q |
217 |
tgccaaagaagccaacgtggtatgt |
241 |
Q |
| |
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||||||||||||||| ||||||||| |
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| T |
2590614 |
tgccaaagaagccaatgtggtatgt |
2590638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 2571025 - 2570798
Alignment:
| Q |
17 |
attaggatgtatgctttttgttttctagggttggctttggcctctattgttttcaatatgcttgaacagtatagctttgcttacatgggagagtacttga |
116 |
Q |
| |
|
|||||||| |||| |||||||||||||||| ||||| | || || ||| | ||||||||| |||| |||||||||||||||||||||||||| |||| |
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| T |
2571025 |
attaggatttatggtttttgttttctagggctggctgttatttcaatggttattaatatgcttcaacattatagctttgcttacatgggagagtatttga |
2570926 |
T |
|
| Q |
117 |
ctaagaggattagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaggatcaaaattctacgggtgttatttgctctagact |
216 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||| |
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| T |
2570925 |
ctaagagggttagagaaaaaatgttttctaagatactcacatttgaagttggttggtttgatgaagatcaaaattctacaggttctgtttgctctagact |
2570826 |
T |
|
| Q |
217 |
tgccaaagaagccaacgtggtatgttct |
244 |
Q |
| |
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||||||||| ||||| |||||||||||| |
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| T |
2570825 |
tgccaaagatgccaatgtggtatgttct |
2570798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 2674513 - 2674286
Alignment:
| Q |
17 |
attaggatgtatgctttttgttttctagggttggctttggcctctattgttttcaatatgcttgaacagtatagctttgcttacatgggagagtacttga |
116 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| | ||| | ||| | ||| | ||| |||| ||||||||||||||||||||||||||||||| |
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| T |
2674513 |
attaggatctatgtgttttgttttctagggttggctgttatctcattggttgttaatgtacttcaacattatagctttgcttacatgggagagtacttga |
2674414 |
T |
|
| Q |
117 |
ctaagaggattagagaaagaatgttttccaagatactcacttttgaagttggttggtttgatgaggatcaaaattctacgggtgttatttgctctagact |
216 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| | ||||||||||||| |
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|
| T |
2674413 |
ctaagagggttagagaaaggatgttttccaagatactcacttttgaagttggttggtttgatgaagatcgaaattctacaggttctgtttgctctagact |
2674314 |
T |
|
| Q |
217 |
tgccaaagaagccaacgtggtatgttct |
244 |
Q |
| |
|
||||||||| || || |||||||||||| |
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|
| T |
2674313 |
tgccaaagatgctaatgtggtatgttct |
2674286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 33 - 244
Target Start/End: Original strand, 2449776 - 2449987
Alignment:
| Q |
33 |
tttgttttctagggttggctttggcctctattgttttcaatatgcttgaacagtatagctttgcttacatgggagagtacttgactaagaggattagaga |
132 |
Q |
| |
|
|||||||||||||||| || || |||| || ||||| ||| ||||| | || ||| | ||||| ||||||||||||||||| ||||||||| ||||||| |
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|
| T |
2449776 |
tttgttttctagggttagccttatcctcaatggtttttaatgtgcttcagcattattgttttgcatacatgggagagtacttaactaagagggttagaga |
2449875 |
T |
|
| Q |
133 |
aagaatgttttccaagatactcacttttgaagttggttggtttgatgaggatcaaaattctacgggtgttatttgctctagacttgccaaagaagccaac |
232 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||| |||||||||| ||||||| |||| |
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| T |
2449876 |
aagagtgttttccaagatactcacttttgaagttggttggtttgatgaagatcaaaattctacaggtgctatttgttctagacttgacaaagaaaccaat |
2449975 |
T |
|
| Q |
233 |
gtggtatgttct |
244 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2449976 |
gtggtatgttct |
2449987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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