View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7722_high_1 (Length: 621)
Name: NF7722_high_1
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7722_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 355 - 605
Target Start/End: Complemental strand, 1240004 - 1239754
Alignment:
| Q |
355 |
agaactatggtatgagagtcattagttattgtttatgtatagggtacacaaccattttggttcccgattatgtgaggtgttgtaatgtatcaaaattgca |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1240004 |
agaactatggtatgagagtcattagttattgtttatgtatagggtacacaaccattttggttcccgattatgtgaggtgttgtaatgtatcaaaattgca |
1239905 |
T |
|
| Q |
455 |
aatacatcccgagtcataaatgtaatatatgtactaaattgaacaacaaattacacattcaatgactaaataaactgacaactaatattagatttgagga |
554 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1239904 |
aatacatcccgagccataaatgtaatatatgtattaaattgaacaacaaattacacattcaatgactaaataaactgacaactaatattagatttgagga |
1239805 |
T |
|
| Q |
555 |
ccaaagtggctaataaaagagacacttgtggatgtgtttacaacttttatg |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1239804 |
ccaaagtggctaataaaagagacacttgtggatgtgtttacaacttttatg |
1239754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 1240360 - 1240090
Alignment:
| Q |
1 |
tagtgaatccatatgtttagagtgatctgaactgtatttgtttagagtgattttcacaatgagtgatgttatctaaacatctaaaatttgacacaatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1240360 |
tagtgaatccatatgtttagagtgatctgaactgtatttgtttagagtgattttcacaatgagtgatgttatctaaacatctaaaatttgacacaatata |
1240261 |
T |
|
| Q |
101 |
ataatacatttataacgatggatgtgacttggagaccaagnnnnnnnnnnnnnnnnnnnnnnnttgtatctataccatatacgtatacggtgttggacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1240260 |
ataatacatttataacgatggatgtgacttggagaccaagaaaaaactaattaaaaaacaaaattgtatctataccatatacgtatacggtgttggacac |
1240161 |
T |
|
| Q |
201 |
caaaatttgctttcctatgccctatgttcatgtttgtttttctatgctctatttttcgttgatgaaaattg |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1240160 |
caaaatttgctttcctatgccctatgttcatgtttgtttttctatgctctatttttcgttgatgaaaattg |
1240090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 544 - 593
Target Start/End: Complemental strand, 29659245 - 29659196
Alignment:
| Q |
544 |
agatttgaggaccaaagtggctaataaaagagacacttgtggatgtgttt |
593 |
Q |
| |
|
||||||||| |||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
29659245 |
agatttgagtaccaaaatgactaataaaagagacactagtggatgtgttt |
29659196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 1172706 - 1172749
Alignment:
| Q |
439 |
atgtatcaaaattgcaaatacatcccgagtcataaatgtaatat |
482 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
1172706 |
atgtatcaaatttgcaaatacatccctagtcagaaatgtaatat |
1172749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 10175280 - 10175205
Alignment:
| Q |
61 |
gagtgatgttatctaaacatctaaaatttgacacaatataataatacatttataacgatggatgtgacttggagac |
136 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
10175280 |
gagtgatgttatctgaatatctaaaatttgacaccgtataaaaatacatttataacaatggatgtgacttggagac |
10175205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 10175175 - 10175126
Alignment:
| Q |
164 |
ttgtatctataccatatacgtatacggtgttggacaccaaaatttgcttt |
213 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||||||| ||||||| |
|
|
| T |
10175175 |
ttgtatctataccatatatgtatatggtgtcggacaccaaaaattgcttt |
10175126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 549 - 596
Target Start/End: Original strand, 14242763 - 14242810
Alignment:
| Q |
549 |
tgaggaccaaagtggctaataaaagagacacttgtggatgtgtttaca |
596 |
Q |
| |
|
||||||||||| || |||||||||||||||| |||||||||||||||| |
|
|
| T |
14242763 |
tgaggaccaaaatgactaataaaagagacacatgtggatgtgtttaca |
14242810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University