View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7722_high_10 (Length: 240)
Name: NF7722_high_10
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7722_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30726888 - 30727114
Alignment:
| Q |
1 |
tatccgttatgcggttaaatccataaatttttagatatccatgagtatatttagatatccacatataacgttttttaaaatgatttttgtt-nnnnnnnt |
99 |
Q |
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| T |
30726888 |
tatccgttatgcggttaaatccataaatttttagatatccatgagtatatttagatatccacatataacgttttttaaaatgatttttgttaaaaaaaat |
30726987 |
T |
|
| Q |
100 |
ctttttacaattacttaagcttaaacaaaaaatcatcacattcatttccttctttttacacc----nnnnnnnnnnttccttctttttaccaaaacataa |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30726988 |
ctttttacaattacttaagcttaaacaaaaaatcatcacattcatttccttctttttacaccaaaaaaaaaaaaaaatccttctttttaccaaaacataa |
30727087 |
T |
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| Q |
196 |
caatattcttacacaataatatacata |
222 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
30727088 |
caatattcttacacaataatatacata |
30727114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 764570 - 764616
Alignment:
| Q |
172 |
ttccttctttttaccaaaacataacaatattcttacacaataatata |
218 |
Q |
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|||||||||||||||||||||||||||||| | |||| ||||||||| |
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| T |
764570 |
ttccttctttttaccaaaacataacaatatccatacataataatata |
764616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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