View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7722_high_4 (Length: 335)

Name: NF7722_high_4
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7722_high_4
NF7722_high_4
[»] chr2 (3 HSPs)
chr2 (177-327)||(15444629-15444779)
chr2 (20-138)||(15444463-15444581)
chr2 (218-327)||(27415706-27415815)
[»] chr3 (2 HSPs)
chr3 (211-324)||(12113672-12113785)
chr3 (211-324)||(6607269-6607386)
[»] scaffold0060 (1 HSPs)
scaffold0060 (212-327)||(48501-48617)
[»] chr5 (1 HSPs)
chr5 (211-289)||(15415485-15415563)
[»] chr4 (3 HSPs)
chr4 (211-327)||(41816198-41816315)
chr4 (273-325)||(12877633-12877685)
chr4 (279-327)||(16953056-16953104)
[»] chr8 (1 HSPs)
chr8 (261-324)||(23549099-23549163)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 177 - 327
Target Start/End: Original strand, 15444629 - 15444779
Alignment:
Q  177 ttcacttttatgattagtaaaatcaacctgcttagtgaataaagtgaatggtggataaacattagcacctcacgtcatgtttgatatgattatgtgatgt 276  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15444629 ttcacttctatgattagtaaaatcaacctgcttagtggatcaagtgaatggtggataaacattagcacctcgcgtcatgtttgatatgattatgtgatgt 15444728  T
Q  277 tcaaaacatatgctactttcgaaaataagaaagtgttgttataatattctt 327  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15444729 tcaaaacatatgctacttttgaaaataagaaagtgttgttataatattctt 15444779  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 15444463 - 15444581
Alignment:
Q  20 aactgcactgtgaataataacttcaactgccaagagaataggaacccgcaaaaggatcctataatagaaatcaacgtccaccatgaagaaatggaactgg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||    
T  15444463 aactgcactgtgaataataacttcaactgccaagagaataggaacccgcaaaaggatcctataatagaaatcaacatccaccatcaagaaatggaattgg 15444562  T
Q  120 gtcccaatttacataggag 138  Q
    ||| |||||||||||||||    
T  15444563 gtcacaatttacataggag 15444581  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 327
Target Start/End: Original strand, 27415706 - 27415815
Alignment:
Q  218 aagtgaatggtggataaacattagcacctcacgtcatgtttgatatgattatgtgatgttcaaaacatatgctactttcgaaaataagaaagtgttgtta 317  Q
    ||||||||||||||||||||||||||| ||||| ||||| || |||||||  |  |||||||||||||| |||||    ||||||| |||||| ||||||    
T  27415706 aagtgaatggtggataaacattagcacttcacgccatgtctgttatgattgagctatgttcaaaacataggctacaactgaaaataggaaagtcttgtta 27415805  T
Q  318 taatattctt 327  Q
     |||||||||    
T  27415806 gaatattctt 27415815  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 211 - 324
Target Start/End: Original strand, 12113672 - 12113785
Alignment:
Q  211 gtgaataaagtgaatggtggataaacattagcacctcacgtcatgtttgatatgattatgtgatgttcaaaacatatgctactttcgaaaataagaaagt 310  Q
    |||||| |||||||||||||||||||| |||  | | ||| || ||||| |||||||||||||||||||||||||||||||||   || ||||||||| |    
T  12113672 gtgaattaagtgaatggtggataaacactagtgcataacgccaagtttgttatgattatgtgatgttcaaaacatatgctactgctgagaataagaaaat 12113771  T
Q  311 gttgttataatatt 324  Q
    ||||||||||||||    
T  12113772 gttgttataatatt 12113785  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 324
Target Start/End: Original strand, 6607269 - 6607386
Alignment:
Q  211 gtgaataaagtgaatggtggataaacattagcacctcacgtcatgtttgatatgattatgtgatgttcaaaacatatgctactttcgaaaat----aaga 306  Q
    |||||| |||||||||||| ||||||||||||   |||   ||| |||| ||||||||||  |||||| ||||||||||||||   ||||||    ||||    
T  6607269 gtgaattaagtgaatggtgaataaacattagcttatcagagcatatttgctatgattatgctatgttcgaaacatatgctactgctgaaaataagaaaga 6607368  T
Q  307 aagtgttgttataatatt 324  Q
    ||||||||||||||||||    
T  6607369 aagtgttgttataatatt 6607386  T

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Target: scaffold0060 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 327
Target Start/End: Original strand, 48501 - 48617
Alignment:
Q  212 tgaataaagtgaatggtggataaacattagcacctcacgtcatgttt-gatatgattatgtgatgttcaaaacatatgctactttcgaaaataagaaagt 310  Q
    ||||| ||||||||| ||||||||||||||  |||| ||  |||||| | ||||||||||  |||||||||||||||| ||||  |||||||||||||||    
T  48501 tgaattaagtgaatgatggataaacattagtgcctcgcgctatgttttgctatgattatgctatgttcaaaacatatgatactgccgaaaataagaaagt 48600  T
Q  311 gttgttataatattctt 327  Q
    ||||||| ||| |||||    
T  48601 gttgttagaatcttctt 48617  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 15415485 - 15415563
Alignment:
Q  211 gtgaataaagtgaatggtggataaacattagcacctcacgtcatgtttgatatgattatgtgatgttcaaaacatatgc 289  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||||| ||||||||    |||||||||||||||||    
T  15415485 gtgaattaagtgaatggtggataaacattagcgactcacgtcatgtttgttatgattaatctatgttcaaaacatatgc 15415563  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 327
Target Start/End: Complemental strand, 41816315 - 41816198
Alignment:
Q  211 gtgaataaagtgaatggtggataaacattagcacctcacgtcatgtttgatatgattatgtgatgttc-aaaacatatgctactttcgaaaataagaaag 309  Q
    |||||| ||||| ||| ||||||||||||||| | |||||||||||||  ||||||||||| |||||| |||||||||| || |   || ||||||||||    
T  41816315 gtgaattaagtggatgatggataaacattagcgcatcacgtcatgttttctatgattatgttatgttcaaaaacatatgttattgctgagaataagaaag 41816216  T
Q  310 tgttgttataatattctt 327  Q
    |||||||| ||| |||||    
T  41816215 tgttgttagaatcttctt 41816198  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 12877685 - 12877633
Alignment:
Q  273 atgttcaaaacatatgctactttcgaaaataagaaagtgttgttataatattc 325  Q
    ||||| ||||||||||||||    ||||||||||||||||||||| |||||||    
T  12877685 atgtttaaaacatatgctacaactgaaaataagaaagtgttgttagaatattc 12877633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 16953104 - 16953056
Alignment:
Q  279 aaaacatatgctactttcgaaaataagaaagtgttgttataatattctt 327  Q
    |||||||||||||||    |||||||||||||||||||| |||||||||    
T  16953104 aaaacatatgctactgctaaaaataagaaagtgttgttagaatattctt 16953056  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 23549099 - 23549163
Alignment:
Q  261 tatgattatgtgatgttcaaaa-catatgctactttcgaaaataagaaagtgttgttataatatt 324  Q
    ||||||||||  |||||||||| ||||||||||    ||||||||||||||||||||| ||||||    
T  23549099 tatgattatgctatgttcaaaaacatatgctacggctgaaaataagaaagtgttgttaaaatatt 23549163  T

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