View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7722_high_8 (Length: 284)
Name: NF7722_high_8
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7722_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 262
Target Start/End: Complemental strand, 28670864 - 28670607
Alignment:
| Q |
5 |
agaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaacttgta |
104 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
28670864 |
agaaaagttcgaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacagattttggatgagatgatcaatggaacttgta |
28670765 |
T |
|
| Q |
105 |
gatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttactctttaccaagacca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
28670764 |
gatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatcttaccaaaaaagttgtttatctttccaattttactctctacctagacca |
28670665 |
T |
|
| Q |
205 |
atctgctgattggagggacacacttgcatttttctgggaacccgatcctcctaaagcc |
262 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28670664 |
atctgctgattggagggacacacttgcatttttctgggcacccgatcctcctaaagcc |
28670607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 28675012 - 28674767
Alignment:
| Q |
1 |
tgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
28675012 |
tgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtgataaatcatggaattccaacacatattttggatgagatgatcaaaggaact |
28674913 |
T |
|
| Q |
101 |
tgtagatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttactctttaccaag |
200 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28674912 |
tgtagatttcaccaacaagatgccaaggcgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctctccaattttactctttaccaag |
28674813 |
T |
|
| Q |
201 |
accaatctgctgattggagggacacacttgcatttttctgggaacc |
246 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28674812 |
accaatctgctgattggagggacacacttgcatttttctgggaacc |
28674767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 28642285 - 28642044
Alignment:
| Q |
1 |
tgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaact |
100 |
Q |
| |
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||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| |||||| |
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| T |
28642285 |
tgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaatcatggaattccagttcatgttttggatgagatgatcaaaggaact |
28642186 |
T |
|
| Q |
101 |
tgtagatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttactctttaccaag |
200 |
Q |
| |
|
||||||||||| ||||| ||| | ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |
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| T |
28642185 |
tgtagatttcatcaacaggatcctaaggtgaggaaagagtattacacccgtgatctcactaaaaaagttgtttatctttccaattttactctttccgaag |
28642086 |
T |
|
| Q |
201 |
accaatctgctgattggagggacacacttgcatttttctggg |
242 |
Q |
| |
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| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
28642085 |
atcaatctgctgagtggagggacacacttgcatttttctggg |
28642044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 28651146 - 28650892
Alignment:
| Q |
1 |
tgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaact |
100 |
Q |
| |
|
||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |||||||| |||||| |
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| T |
28651146 |
tgtgagacaacttgaaaatgcatgtgagaaatggggattctttcaagtaataaatcatggaattccagttcatgttttgcatgagatgatcaaaggaact |
28651047 |
T |
|
| Q |
101 |
tgtagatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttactctttaccaag |
200 |
Q |
| |
|
||||||||||| ||||| ||| | ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |
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| T |
28651046 |
tgtagatttcatcaacaggatcctaaggtgaggaaagagtattacacccgtgatctcactaaaaaagttgtttatctttccaattttactctttccgaag |
28650947 |
T |
|
| Q |
201 |
accaatctgctgattggagggacacacttgcatttttctgggaacccgatcctcc |
255 |
Q |
| |
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| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |
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| T |
28650946 |
atcaatctgctgagtggagggacacacttgcatttttctgggcacctcatcctcc |
28650892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 28696373 - 28696144
Alignment:
| Q |
1 |
tgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |
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| T |
28696373 |
tgtgagaaaagttcaaaatgcaagtgagaattggggattctttcaagtaataaatcatggaattccaacacaaattttggatgagatgatcaaaggaact |
28696274 |
T |
|
| Q |
101 |
tgtagatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttactctttaccaag |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||||| || || | |||| || ||| |||||||||||| |||| |||| || ||||||||| | |
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| T |
28696273 |
tgtagatttcatcaacaagatgccaaggtgagaaaagagtattatacatgcgatcccaacaagaaagttgtttatgtttctaattatagtctttaccatg |
28696174 |
T |
|
| Q |
201 |
accaatctgctgattggagggacacacttg |
230 |
Q |
| |
|
| | ||||| ||||||||||| |||||| |
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| T |
28696173 |
atcctgctgctaattggagggactcacttg |
28696144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 28691488 - 28691259
Alignment:
| Q |
1 |
tgtgagaaaagttcaaaatgcaagtgagaaatggggattctttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaact |
100 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| || | ||| |||||||||| |||||||| |||||| |
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| T |
28691488 |
tgtgagaaaagttgaaaatgcatgtgagaagtggggattctttcaagtaataaatcatggaatttcagctcatgttttggatgagatgatcaaaggaact |
28691389 |
T |
|
| Q |
101 |
tgtagatttcaccaacaagatgccaaggtgaggaaggagtactacacccgtgatctcaccaaaaaagttgtttatctttccaattttactctttaccaag |
200 |
Q |
| |
|
||||||||||| |||||||||| | ||| ||||| ||||| ||||| ||||||| | ||| ||||||||||| |||| |||| || ||||||||| | |
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|
| T |
28691388 |
tgtagatttcatcaacaagatgttatggtaaggaaagagtattacacacgtgatcctaacaagaaagttgtttacgtttctaattatagtctttaccatg |
28691289 |
T |
|
| Q |
201 |
accaatctgctgattggagggacacacttg |
230 |
Q |
| |
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| | ||||| ||||||||||| |||||| |
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| T |
28691288 |
atcctgctgctaattggagggactcacttg |
28691259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 185
Target Start/End: Complemental strand, 28717651 - 28717507
Alignment:
| Q |
41 |
tttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaacttgtagatttcaccaacaagatgccaaggtgaggaaggagt |
140 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| |||||||||| |||||||| ||||||||||||||||| |||||||||| | ||| ||||| |||| |
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|
| T |
28717651 |
tttcaagtaataaatcatggaatttcaactcatgttttggatgagatgatcaaaggaacttgtagatttcatcaacaagatgttagggtaaggaaagagt |
28717552 |
T |
|
| Q |
141 |
actacacccgtgatctcaccaaaaaagttgtttatctttccaatt |
185 |
Q |
| |
|
| |||| |||||| | ||| |||||||||||| |||| |||| |
|
|
| T |
28717551 |
attacatatgtgatcctaacaagaaagttgtttatatttctaatt |
28717507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 41238469 - 41238565
Alignment:
| Q |
27 |
agaaatggggattctttcaagtaataaatcatggaattccaacacatattttggatgacatgatcaatggaacttgtagatttcaccaacaagatgc |
123 |
Q |
| |
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|||| |||||||| || ||||| || |||||||| |||||| ||| |||||||||| ||||||||||||| |||||||||||| |||||||||| |
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| T |
41238469 |
agaactggggatttttccaagtgatcaatcatggtattccacttcatgttttggatgagatgatcaatggaatttgtagatttcatgaacaagatgc |
41238565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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