View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7722_low_1 (Length: 889)

Name: NF7722_low_1
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7722_low_1
NF7722_low_1
[»] chr4 (12 HSPs)
chr4 (8-385)||(54789931-54790308)
chr4 (10-385)||(54778839-54779216)
chr4 (8-385)||(52282585-52282970)
chr4 (444-709)||(18923082-18923348)
chr4 (780-872)||(54789817-54789909)
chr4 (769-871)||(52282448-52282550)
chr4 (748-872)||(54779222-54779342)
chr4 (616-742)||(44475152-44475278)
chr4 (689-742)||(2178974-2179026)
chr4 (689-742)||(6120739-6120792)
chr4 (391-430)||(18923014-18923053)
chr4 (395-465)||(44474923-44474994)
[»] chr5 (8 HSPs)
chr5 (389-742)||(14830094-14830443)
chr5 (444-742)||(28739674-28739979)
chr5 (616-742)||(985116-985242)
chr5 (616-718)||(21175538-21175640)
chr5 (624-706)||(26414461-26414543)
chr5 (386-512)||(26414618-26414745)
chr5 (391-435)||(28740009-28740053)
chr5 (395-465)||(984887-984958)
[»] chr8 (6 HSPs)
chr8 (208-385)||(19295972-19296149)
chr8 (390-742)||(37952677-37953037)
chr8 (780-872)||(19295858-19295950)
chr8 (624-742)||(10890590-10890708)
chr8 (641-742)||(5572546-5572647)
chr8 (653-727)||(5643251-5643325)
[»] chr1 (7 HSPs)
chr1 (391-742)||(48975727-48976095)
chr1 (624-738)||(43535568-43535682)
chr1 (616-717)||(32241064-32241165)
chr1 (390-437)||(23999129-23999176)
chr1 (395-465)||(32240741-32240812)
chr1 (395-502)||(43535799-43535906)
chr1 (595-742)||(52456005-52456151)
[»] chr7 (3 HSPs)
chr7 (417-742)||(21976213-21976546)
chr7 (616-715)||(43428017-43428116)
chr7 (390-435)||(7560013-7560058)
[»] chr6 (4 HSPs)
chr6 (487-742)||(23059185-23059438)
chr6 (410-742)||(6956138-6956475)
chr6 (391-436)||(23059439-23059484)
chr6 (767-800)||(11602812-11602845)
[»] chr2 (8 HSPs)
chr2 (591-742)||(42926559-42926710)
chr2 (416-545)||(42926401-42926532)
chr2 (591-745)||(12209939-12210091)
chr2 (392-563)||(35608482-35608647)
chr2 (391-502)||(12209779-12209890)
chr2 (601-742)||(9197241-9197382)
chr2 (591-718)||(35608316-35608444)
chr2 (689-742)||(32553689-32553742)
[»] chr3 (5 HSPs)
chr3 (625-736)||(9702095-9702206)
chr3 (616-742)||(49137929-49138055)
chr3 (504-559)||(9701966-9702021)
chr3 (336-372)||(21768622-21768658)
chr3 (395-465)||(49138213-49138284)


Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 54790308 - 54789931
Alignment:
Q  8 agatggacatcagagatatatatgatgcaattagaaaaaagaataagatattccccaaagcaaaacaaactgcataagtgcataacatgcattgtgcaca 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54790308 agatggacatgagagatatatatgatgcaattagaaaaaagaataagatattccccaaagcaaaacaaactgcataagtgcataacatgcattgtgcaca 54790209  T
Q  108 gtttagaaatacaaattcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaata 207  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  54790208 gtttacaaatacaaattcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaatg 54790109  T
Q  208 acatgcactctcgcaaaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgctactaattgaaagaaagctatgaaacactgac 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||    
T  54790108 acatgcactctcgcaaaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgcaaataattgaaagaaagctatgaaacactaac 54790009  T
Q  308 agacacttgacacaacatagacacataatgagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttag 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54790008 agacacttgacacaacatagacacataatgagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttag 54789931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 10 - 385
Target Start/End: Original strand, 54778839 - 54779216
Alignment:
Q  10 atggacatcagagatatatatgatgcaattagaaaaaagaataagatattccccaaagcaaaacaaactgcataagtgcataacatgcattgtgcacagt 109  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54778839 atggacatgagagatatatatgatgcaattagaaaaaagaataagatattccccaaagcaaaacaaactgcataagtgcataacatgcattgtgcacagt 54778938  T
Q  110 ttagaaatacaaattcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataac 209  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54778939 ttacaaatacaaattcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagattcaataac 54779038  T
Q  210 atgcactctcgcaaaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgctactaattgaaagaaagctatgaaacactgaca- 308  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||     
T  54779039 atgcactctcccaaaagaaataccacacacaactaaataactaaaaattgttagaaaacagtctgctagtaattgaaagaaagctatgaaacactgacac 54779138  T
Q  309 -gacacttgacacaacatagacacataatgagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttag 385  Q
     ||||||  |||  |||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||| ||||||    
T  54779139 tgacactgcacatgacatagacacatcatgagaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttag 54779216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 52282970 - 52282585
Alignment:
Q  8 agatggacatcagagatatatatgatgcaattagaaaaaagaataagatattccccaaagcaaaacaaact-----gcataagtgcataacatgcattgt 102  Q
    |||| ||||| ||||||||| ||||||||||||| |||||||||||||||| ||||| |||||||||||||     ||||||||||||||||||||||||    
T  52282970 agatagacatgagagatatacatgatgcaattaggaaaaagaataagatatcccccagagcaaaacaaactaaactgcataagtgcataacatgcattgt 52282871  T
Q  103 gcacagtttagaaatacaaattcagaacatataaggaaaactacagccatgcatgaagcagagttacatcaaaatgcactacttattaaaaatatagatt 202  Q
    ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    ||| ||||||||||||||||||||||    
T  52282870 gcacaatatacaaatacaaattcagaacatataaggaaaactacagccatgcatgaagcagagatacatc---gtgcgctacttattaaaaatatagatt 52282774  T
Q  203 caataacatgcact---ctcgcaaaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgctactaattgaaagaaagctatgaa 299  Q
    || |||||||||||   ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  52282773 cagtaacatgcactctcctcccaaaagaaaaaccacacacaactaaataactaaaaattgttaaaatacagtctgcttctaattgaaagaaagctatgaa 52282674  T
Q  300 acactgac--agacacttgacacaacatagacacataat-gagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttag 385  Q
    ||||||||  | ||||| ||||| |||||||||| | || ||||  | |||||||||| || ||| ||||||||||| | |||||||||    
T  52282673 acactgacataaacactggacacgacatagacacgtcatggagagaacgaattatttgtacataatcacatgtgtcagtttcgtgttag 52282585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 444 - 709
Target Start/End: Original strand, 18923082 - 18923348
Alignment:
Q  444 tatatattttagattaggcataattgtatcacaactacgcagttggcgcagcggaaatgttgtttgtttctcttgcgtaggtcgcgggttcgtcccttcc 543  Q
    ||||||| |||||||||||||| |||||||||||||| | |||||||| |  ||||||| |||| |||| ||||| |||||| || |||||| |||| ||    
T  18923082 tatatatattagattaggcatacttgtatcacaactatgtagttggcgtaatggaaatgatgttagtttttcttgtgtaggttgctggttcgaccctccc 18923181  T
Q  544 atcctctttctgttatatttttactattttgttnnnnnnnnnnnngc-ctcctataaggattcgaactggcatcccccaccctgcaatcaagcaatataa 642  Q
    ||||||||||| |||||||||||||||||| ||               |||||||  ||| |||||| ||||||||| || |||||||||||||| ||||    
T  18923182 atcctctttcttttatatttttactatttttttttgtttaaagaaaaactcctatgtggaatcgaaccggcatcccctactctgcaatcaagcaaaataa 18923281  T
Q  643 accactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattct 709  Q
    ||||||||||||||||||| ||||||||||||| |||| ||| || |||||||||||||||||||||    
T  18923282 accactggaccagttaacatttatgatatttctctcacacagtttaatatatatttcatacaattct 18923348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 780 - 872
Target Start/End: Complemental strand, 54789909 - 54789817
Alignment:
Q  780 atcagaggtgttggtgccacaaagaaagaaagactggttgtaactaggcaaaataataatatacaaataaaagaccttataataccctagttc 872  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54789909 atcagaggtgttggtgccacaaagaaagaaagactggttgaaactaggcaaaataataatatacaaataaaagaccttataataccctagttc 54789817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 769 - 871
Target Start/End: Complemental strand, 52282550 - 52282448
Alignment:
Q  769 acacgcctttgatcagaggtgttggtgccacaaagaaagaaagactggttgtaactaggcaaaataataatatacaaataaaagaccttataatacccta 868  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52282550 acacgcctttgatcagaggtgttggtgccacagagtaagaaagactggttgaaactaggaaaaataataatatacaaataaaagaccttataatacccta 52282451  T
Q  869 gtt 871  Q
    |||    
T  52282450 gtt 52282448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 748 - 872
Target Start/End: Original strand, 54779222 - 54779342
Alignment:
Q  748 gacaccgaccgaca-gtgtgggacacgcctttgatcagaggtgttggtgccacaaagaaagaaagactggttgtaactaggcaaaataataatatacaaa 846  Q
    |||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||| || ||||   ||||||||    
T  54779222 gacaccgaccgacaagtgtgggacacgcctttgatcagaggtgt--gtgccacaaagaaagaaagactggttgaaactaggaaacataa---tatacaaa 54779316  T
Q  847 taaaagaccttataataccctagttc 872  Q
    |||||||||||||||||| |||||||    
T  54779317 taaaagaccttataatactctagttc 54779342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 616 - 742
Target Start/End: Original strand, 44475152 - 44475278
Alignment:
Q  616 cccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcacc 715  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||  ||||| ||| || | |||||||||||| ||| ||||||||    
T  44475152 cccctaccctgcaatcaagcaaaataaaccactggaccagttaacaattatgatactttcttcacacagtttaaaatatatttcatataatactggcacc 44475251  T
Q  716 ccccataaaatattccaagatccgcca 742  Q
    ||| | ||| | || ||||||||||||    
T  44475252 cccaagaaattttttcaagatccgcca 44475278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 689 - 742
Target Start/End: Original strand, 2178974 - 2179026
Alignment:
Q  689 atatatatttcatacaattctggcaccccccataaaatattccaagatccgcca 742  Q
    ||||||||||||||||||||||||| |||| | |||||||| ||||||||||||    
T  2178974 atatatatttcatacaattctggca-ccccaaaaaaatatttcaagatccgcca 2179026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 689 - 742
Target Start/End: Complemental strand, 6120792 - 6120739
Alignment:
Q  689 atatatatttcatacaattctggcaccccccataaaatattccaagatccgcca 742  Q
    |||||||||||||||||||||| ||||||| | ||||||||  |||||||||||    
T  6120792 atatatatttcatacaattctgacacccccaaaaaaatattttaagatccgcca 6120739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 430
Target Start/End: Original strand, 18923014 - 18923053
Alignment:
Q  391 cagtggcggatcttcatagggaccagcaggtgccatggta 430  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  18923014 cagtggcggaacttcatagggacctgcaggtgccatggta 18923053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 44474923 - 44474994
Alignment:
Q  395 ggcggatcttcatagggaccagcaggtgccatggtatcccc-aacatttctatatattttagattaggcata 465  Q
    ||||||||||| | |||||  ||||||||||||||| |||| ||  ||||||||||| ||||||||||||||    
T  44474923 ggcggatcttccttgggacaggcaggtgccatggtaacccccaagttttctatatatattagattaggcata 44474994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 389 - 742
Target Start/End: Complemental strand, 14830443 - 14830094
Alignment:
Q  389 cccagtggcggatcttcatagggaccagcaggtgccatggtatccccaacatttctatatattttagattaggcataattgtatcacaactacgcagttg 488  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||| | |||| ||||||||||||||||||||||||||||| |||||||    
T  14830443 cccagtggcgaatcttcatagggacctgcaggtgccatggtacccccaacttttccacatatattagattaggcataattgtatcacaactatgcagttg 14830344  T
Q  489 gcgcagcggaaatgttgtttgtttctcttgcgtaggtcgcgggttcgtcccttccatcctctttctgttatatttttactattttgttnnnnnnnnnnnn 588  Q
    |||| | ||||||| || |||||| |||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||                
T  14830343 gcgcggtggaaatgatgcttgtttttcttgcataggtcgcgagtttgacccttccatcctctttctgttatatttttactattttgttcaaaaaaaaag- 14830245  T
Q  589 gcctcctataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagcttt 688  Q
      ||| |||  |||| ||||| |||||| || || |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||     
T  14830244 --ctcgtatgtggatacgaaccggcatctcctactctgcaatcaagcaaaataaaccactggaccagttaacagttatgatatttccttcacacagttta 14830147  T
Q  689 atatatatttcatacaattctggcaccccccataaaatattccaagatccgcca 742  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  14830146 atatatatttcatacaattccggca-cccccataaaatattccaacatccgcca 14830094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 444 - 742
Target Start/End: Complemental strand, 28739979 - 28739674
Alignment:
Q  444 tatatattttagattaggcataattgtatcacaactacgcagttggcgcagcggaaatgttgtttgtttctcttgcgtaggtcgcgggttcgtcccttcc 543  Q
    ||||||| ||||||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||| ||| || ||||||||| | | | |||||||    
T  28739979 tatatatattagattaggcataaatgtatcacaattatgcagttggcgcagcggaaatgatgtttgtttttctcgcataggtcgcgagat-gacccttcc 28739881  T
Q  544 atcctctttct-----------gttatatttttactattttgttnnnnnnnnnnnngcctcctataaggattcgaactggcatccccc-accctgcaatc 631  Q
    |||||||||||           |||||||||||||||||||| |            | ||||||   |||||||||| |||||||||  || || |||||    
T  28739880 atcctctttcttttatatttctgttatatttttactattttgctcaaaaaaa----ggctcctaagtggattcgaaccggcatccccatacactacaatc 28739785  T
Q  632 aagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcaccccccataaaatattcc 731  Q
    |||||| |||||||| ||||||||||||||||||||||||||| | ||| ||| || |||||||||||||||||||||||||||| ||||||||||||||    
T  28739784 aagcaaaataaaccattggaccagttaacagttatgatatttcctccacacagtttaatatatatttcatacaattctggcaccctccataaaatattcc 28739685  T
Q  732 aagatccgcca 742  Q
    |||||||||||    
T  28739684 aagatccgcca 28739674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 616 - 742
Target Start/End: Original strand, 985116 - 985242
Alignment:
Q  616 cccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcacc 715  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||  |||||  || || | |||||||||||||||| ||||||||    
T  985116 cccctaccctgcaatcaagcaaaataaaccactggaccagttaacaattatgatactttcttcacatagtttaaaatatatttcatacaatactggcacc 985215  T
Q  716 ccccataaaatattccaagatccgcca 742  Q
    ||| | ||| | || ||||||||||||    
T  985216 cccaagaaattttttcaagatccgcca 985242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 616 - 718
Target Start/End: Complemental strand, 21175640 - 21175538
Alignment:
Q  616 cccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcacc 715  Q
    |||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||  ||||| ||| || | |||||||||||||||| ||| ||||    
T  21175640 cccccaccctgcaatcaagcaaaataaaccactggacaagttaacaattatgatactttcttcacacagtttaaaatatatttcatacaatactgacacc 21175541  T
Q  716 ccc 718  Q
    |||    
T  21175540 ccc 21175538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 624 - 706
Target Start/End: Complemental strand, 26414543 - 26414461
Alignment:
Q  624 ctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaat 706  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||  ||  || ||||||||||||||||||    
T  26414543 ctgcaatcaagcaaaataaaccactggaccagttaacaattatgatatttccttcaaacaatttgatatatatttcatacaat 26414461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 386 - 512
Target Start/End: Complemental strand, 26414745 - 26414618
Alignment:
Q  386 acacccagtggcggatcttcatagggaccagcaggtgccatggtatcccc-aacatttctatatattttagattaggcataattgtatcacaactacgca 484  Q
    |||| ||| ||||||||||| | |||||  ||||||||||||||| |||| ||  ||||||||||| ||| ||||||||||||  || ||| | ||| ||    
T  26414745 acactcaggggcggatcttccttgggacaggcaggtgccatggtaccccccaagttttctatatatattaaattaggcataatcttaacactagtactca 26414646  T
Q  485 gttggcgcagcggaaatgttgtttgttt 512  Q
    ||||| ||||| ||||||  ||||||||    
T  26414645 gttggtgcagcagaaatgaagtttgttt 26414618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 28740053 - 28740009
Alignment:
Q  391 cagtggcggatcttcatagggaccagcaggtgccatggtatcccc 435  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||    
T  28740053 cagtggcgcatcttcatagggacctgcaggtgccatggtaccccc 28740009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 984887 - 984958
Alignment:
Q  395 ggcggatcttcatagggaccagcaggtgccatggtatcccc-aacatttctatatattttagattaggcata 465  Q
    ||||||||||| | |||||  ||||||||||||||| |||| ||  ||||||||||| ||||||||||||||    
T  984887 ggcggatcttccttgggacaggcaggtgccatggtaccccccaagttttctatatatattagattaggcata 984958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 166; Significance: 2e-88; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 208 - 385
Target Start/End: Complemental strand, 19296149 - 19295972
Alignment:
Q  208 acatgcactctcgcaaaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgctactaattgaaagaaagctatgaaacactgac 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||    
T  19296149 acatgcactctcgcaaaagaaaaaccacacacaactaaataactaaaaattgttagaatacagtctgcaaataattgaaagaaagctatgaaacactaac 19296050  T
Q  308 agacacttgacacaacatagacacataatgagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttag 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19296049 agacacttgacacaacatagacacataatgagaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttag 19295972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 390 - 742
Target Start/End: Original strand, 37952677 - 37953037
Alignment:
Q  390 ccagtggcggatcttcatagggaccagcaggtgccatggtatccccaacatttctatatattttagattaggcataattgtatcacaactacgcagttgg 489  Q
    ||||||||||||||||| ||||||| ||| ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  37952677 ccagtggcggatcttcacagggacctgcatgtgccatggtacccccaacttttctatatatattagattaggcataattgtatctcaactatgcagttgg 37952776  T
Q  490 cgcagcggaaatgttgtttgtttctcttgcgtaggtcgcgggttcgtcccttccatcctc-----------tttctgttatatttttactattttgttnn 578  Q
    ||||| ||||||| |||||| || ||||| |||||||||||||||| |||||||||||||           |||||||||||||||||||||||||||      
T  37952777 cgcagtggaaatgatgtttgcttttcttgagtaggtcgcgggttcgacccttccatcctctttcttttatatttctgttatatttttactattttgttca 37952876  T
Q  579 nnnnnnnnnngcctcctataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttc 678  Q
                |||||||  |||||| ||| |||||| ||||| |||  ||||||||| || ||||||||||||||||||| ||||||||||||  |||    
T  37952877 aaaaaaaat---ctcctatgtggattcaaaccggcatctcccactctgggatcaagcaaaatgaaccactggaccagttaactgttatgatatttacttc 37952973  T
Q  679 acccagctttatatatatttcatacaattctggcaccccccataaaatattccaagatccgcca 742  Q
    || ||| || ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  37952974 acacagtttaatatatatttcatacaattttggcaccccccaaaaaatattctaagatccgcca 37953037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 780 - 872
Target Start/End: Complemental strand, 19295950 - 19295858
Alignment:
Q  780 atcagaggtgttggtgccacaaagaaagaaagactggttgtaactaggcaaaataataatatacaaataaaagaccttataataccctagttc 872  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19295950 atcagaggtgttggtgccacaaagaaagaaagactggttgaaactaggcaaaataataatatacaaataaaagaccttataataccctagttc 19295858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 624 - 742
Target Start/End: Original strand, 10890590 - 10890708
Alignment:
Q  624 ctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttct-ttcacccagctttatatatatttcatacaattctggcaccccccata 722  Q
    ||||| |||||||| | ||||||||||||||||||||| |||| ||  |||| || |  || ||| |||||||||||||||||||||||||||||| | |    
T  10890590 ctgcattcaagcaaaacaaaccactggaccagttaacaattat-atccttctcttgaaacaacttaatatatatttcatacaattctggcacccccaaga 10890688  T
Q  723 aaatattccaagatccgcca 742  Q
    ||||||| ||||||||||||    
T  10890689 aaatatttcaagatccgcca 10890708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 641 - 742
Target Start/End: Complemental strand, 5572647 - 5572546
Alignment:
Q  641 aaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcaccccccataaaatattccaagatccgc 740  Q
    ||||||||||||||||||||| ||||    ||  |||||  || ||| ||||||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  5572647 aaaccactggaccagttaacaattatatccttattttcaaacaacttaatatatatttcatacaattttggcacccccaataaaatatttcaagatccgc 5572548  T
Q  741 ca 742  Q
    ||    
T  5572547 ca 5572546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 653 - 727
Target Start/End: Complemental strand, 5643325 - 5643251
Alignment:
Q  653 cagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcaccccccataaaata 727  Q
    ||||||||| || |||||| |||||||  |||||| |||||||||||||| |||| ||| |||||| | ||||||    
T  5643325 cagttaacatttttgatatatctttcaaacagcttaatatatatttcatagaattttggtacccccgagaaaata 5643251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 4e-65; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 391 - 742
Target Start/End: Complemental strand, 48976095 - 48975727
Alignment:
Q  391 cagtggcggatcttcatagggaccagcaggtgccatggtatccccaacatttctatatattt----------tagattaggcataattgtatcacaacta 480  Q
    |||||||||||||||||||||||| ||||||||||||||| |||| | || | ||||||| |          || ||||||||||||||| | |||||||    
T  48976095 cagtggcggatcttcatagggacctgcaggtgccatggtaccccctatatatatatatatatatatatatattaaattaggcataattgtgttacaacta 48975996  T
Q  481 cgcagttggcgcagcggaaatgttgtttgtttctcttgcgtaggtcgcgggttcgtcccttccatcctctttct------gttatatttttactattttg 574  Q
    ||||  |||||| | |||| || | ||||||| |||||||||||||||||||||| | |||||||||||||| |      ||||||||||||||||||||    
T  48975995 cgcaaatggcgctgtggaattgatttttgtttttcttgcgtaggtcgcgggttcgactcttccatcctctttatatttatgttatatttttactattttg 48975896  T
Q  575 ttnnnnnnnnnnnngcctcct-ataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatattt 673  Q
    ||              ||||| ||  |||||| ||||||||||||| || |||| ||||||||| |||||||||| ||||||||||||||||||||||||    
T  48975895 ttcaaaaaaaaaaaagctccttatgtggattcaaactggcatcccctactctgctatcaagcaaaataaaccactagaccagttaacagttatgatattt 48975796  T
Q  674 ctttcacccagctttatatatatttcatacaattctggcaccccccataaaatattccaagatccgcca 742  Q
    ||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48975795 ctttcacacagtttaatatatatttcatacaattctggcaccccgcataaaatattccaagatccgcca 48975727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 624 - 738
Target Start/End: Complemental strand, 43535682 - 43535568
Alignment:
Q  624 ctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcaccccccataa 723  Q
    |||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||  ||| || |||||||||||||||||| ||||||||||| | ||    
T  43535682 ctgcaatcaagcaaaataaatcactggatcagttaacaattatgatatttctttcaaacagtttcatatatatttcatacaatactggcacccccaagaa 43535583  T
Q  724 aatattccaagatcc 738  Q
    ||| || ||||||||    
T  43535582 aatttttcaagatcc 43535568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 616 - 717
Target Start/End: Original strand, 32241064 - 32241165
Alignment:
Q  616 cccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcacc 715  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||  ||||| ||| || | |||||||||||||||| ||||||||    
T  32241064 cccctaccctgcaatcaagcaaaataaaccactggatcagttaacaattatgatactttcttcacacagtttaaaatatatttcatacaatactggcacc 32241163  T
Q  716 cc 717  Q
    ||    
T  32241164 cc 32241165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 23999129 - 23999176
Alignment:
Q  390 ccagtggcggatcttcatagggaccagcaggtgccatggtatccccaa 437  Q
    ||||||||||||||||||| ||||| ||||| ||||||||| ||||||    
T  23999129 ccagtggcggatcttcataaggacctgcaggagccatggtacccccaa 23999176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 465
Target Start/End: Original strand, 32240741 - 32240812
Alignment:
Q  395 ggcggatcttcatagggaccagcaggtgccatggtatcccc-aacatttctatatattttagattaggcata 465  Q
    ||||||||||| | |||||  ||||||||||||||| |||| ||  ||||||||||| ||||||||||||||    
T  32240741 ggcggatcttccttgggacaggcaggtgccatggtaccccccaagttttctatatatattagattaggcata 32240812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 502
Target Start/End: Complemental strand, 43535906 - 43535799
Alignment:
Q  395 ggcggatcttcatagggaccagcaggtgccatggtatccccaacatttctatatattttagattaggcataattgtatcacaactacgcagttggcgcag 494  Q
    ||||||||||| | || ||  ||||||| ||||||| ||| ||  ||||||||||| |||||||||||||||   || ||| | ||| ||||||| ||||    
T  43535906 ggcggatcttccttggtactggcaggtgtcatggtaccccaaagttttctatatatattagattaggcataaccttaacactagtactcagttggtgcag 43535807  T
Q  495 cggaaatg 502  Q
    ||||||||    
T  43535806 cggaaatg 43535799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 742
Target Start/End: Complemental strand, 52456151 - 52456005
Alignment:
Q  595 tataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatat 694  Q
    |||| |||||| |||||||| ||||  | ||||| |||||||| | |||||| ||||| |||||||| ||||    |||  ||||  || ||| ||||||    
T  52456151 tatagggattcaaactggca-cccctgctctgcattcaagcaaaacaaaccattggactagttaacaattatatccttttcttcaaacaacttaatatat 52456053  T
Q  695 atttcatacaattctggcaccccccataaaatattccaagatccgcca 742  Q
    |||||||||||||||  ||||| | | |||||||| ||||||||||||    
T  52456052 atttcatacaattctaacaccctcaaaaaaatatttcaagatccgcca 52456005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 4e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 417 - 742
Target Start/End: Original strand, 21976213 - 21976546
Alignment:
Q  417 caggtgccatggtatccccaacatttctatatattttagattaggcataattgtatcacaactacgcagttggcgcagcggaaatgttgtttgtttctct 516  Q
    |||||||||||||| ||||||| | ||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |||| || |||| |||| |||    
T  21976213 caggtgccatggtacccccaacttctctatatatattagattaggcatatttgtatcacaactacgtagttggcgcagtggaagtgatgttagtttttct 21976312  T
Q  517 tgcgtaggtcgcgggttcgtcccttccatcctctttct------------gttatatttttactattttgttnnnnnnnnnnnngcctcctataaggatt 604  Q
    || |||||||||||||| | |||| ||||| |||||||            ||||||||||||||||||||||              |||||||  |||||    
T  21976313 tgtgtaggtcgcgggtttgaccctcccatcttctttctttttatatttctgttatatttttactattttgttaaaaaaaaag----ctcctatgtggatt 21976408  T
Q  605 cgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcataca 704  Q
    ||||| ||||||| | ||  |||||| |||||| |||||||||||||||| ||||||||||| |||||||| |||| ||| || ||||||||||||||||    
T  21976409 cgaaccggcatcctctactttgcaataaagcaaaataaaccactggaccaattaacagttataatatttctctcacacagtttaatatatatttcataca 21976508  T
Q  705 attctggcaccccccataaaatattccaagatccgcca 742  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  21976509 attatggcaccccccataaaatattccaagatccgcca 21976546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 616 - 715
Target Start/End: Original strand, 43428017 - 43428116
Alignment:
Q  616 cccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcacc 715  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||  ||| | ||| || | |||||||||||||||| ||||||||    
T  43428017 cccctaccctgcaatcaagcaaaataaaccactggaccagttaacaattatgatactttcttcgcacagtttaaaatatatttcatacaatactggcacc 43428116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 7560058 - 7560013
Alignment:
Q  390 ccagtggcggatcttcatagggaccagcaggtgccatggtatcccc 435  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||    
T  7560058 ccagtggcggatcttccttgggacctgcaggtgccatggtatcccc 7560013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 9e-57; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 487 - 742
Target Start/End: Complemental strand, 23059438 - 23059185
Alignment:
Q  487 tggcgcagcggaaatgttgtttgtttctcttgcgtaggtcgcgggttcgtcccttccatcctctttctgttatatttttactattttgttnnnnnnnnnn 586  Q
    |||||||| ||||||| ||||||||| ||||||||||   ||||||||| |||||||||||||||||| |||||||||||||||||||||              
T  23059438 tggcgcagtggaaatgatgtttgtttttcttgcgtagactgcgggttcgacccttccatcctctttctattatatttttactattttgttcaaaaaaaaa 23059339  T
Q  587 nngcctcctataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagct 686  Q
        |  ||||  |||||||||| ||||||||| || |||||||||||||| ||||||| |||||||||||||||||||||||| |||  |||| ||| |    
T  23059338 aaaac--ctatgtggattcgaaccggcatcccctactctgcaatcaagcaaaataaaccgctggaccagttaacagttatgataattccctcacacagtt 23059241  T
Q  687 ttatatatatttcatacaattctggcaccccccataaaatattccaagatccgcca 742  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23059240 taatatatatttcatacaattctggcaccccccatataatattccaagatccgcca 23059185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 410 - 742
Target Start/End: Original strand, 6956138 - 6956475
Alignment:
Q  410 ggaccagcaggtgccatggtatccccaacatttctatatattttagattaggcataattgtatcacaactacgcagttggcgcagcggaaatgttgtttg 509  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||  |||||||||||| |||||||||| ||  |||||||||||||  ||||||  ||| |    
T  6956138 ggacctgcaggtgccatggtacccccaacttttctatatatt--agattaggcatacttgtatcacagctgtgcagttggcgcagtagaaatgacgttag 6956235  T
Q  510 tttctcttgcgtaggtcgcgggttcgtcccttccatcctctttct-----------gttatatttttactattttgttnnnnnnnnnnnngcctcctata 598  Q
    ||| ||||| |||||||||||||| | |||| |||||||||||||           ||||||||||||||||||||||              |||||||     
T  6956236 tttttcttgtgtaggtcgcgggtttgaccctcccatcctctttcttttatatttttgttatatttttactattttgttcagaaaaaag----ctcctatg 6956331  T
Q  599 aggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatattt 698  Q
     ||| || ||| ||||||||| || |||||||||||||| |||||| ||| ||||| |||||||||||||||||||| || | ||| || ||||||||||    
T  6956332 tggaatcaaaccggcatcccctactctgcaatcaagcaaaataaactactagaccaattaacagttatgatatttctctctcacagtttaatatatattt 6956431  T
Q  699 catacaattctggcaccccccataaaatattccaagatccgcca 742  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  6956432 catacaattctggcaccccccataaaatgttccaagatccgcca 6956475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 391 - 436
Target Start/End: Complemental strand, 23059484 - 23059439
Alignment:
Q  391 cagtggcggatcttcatagggaccagcaggtgccatggtatcccca 436  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  23059484 cagtggcggatcttcatagggacctgcaggtgccatggtaccccca 23059439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 800
Target Start/End: Complemental strand, 11602845 - 11602812
Alignment:
Q  767 ggacacgcctttgatcagaggtgttggtgccaca 800  Q
    |||||| |||||||||||||||||||||||||||    
T  11602845 ggacacacctttgatcagaggtgttggtgccaca 11602812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 2e-51; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 591 - 742
Target Start/End: Original strand, 42926559 - 42926710
Alignment:
Q  591 ctcctataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttat 690  Q
    ||||||| |||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || ||    
T  42926559 ctcctatgaggatttgaactggcaccccccactccgcaatcaagcaatataaaccactggaccagttaacagttatgatatttccttcacacagtttaat 42926658  T
Q  691 atatatttcatacaattctggcaccccccataaaatattccaagatccgcca 742  Q
    ||||||||||  || |||||||||||||||||||||||||||||||||||||    
T  42926659 atatatttcaatcatttctggcaccccccataaaatattccaagatccgcca 42926710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 416 - 545
Target Start/End: Original strand, 42926401 - 42926532
Alignment:
Q  416 gcaggtgccatggtatcccc--aacatttctatatattttagattaggcataattgtatcacaactacgcagttggcgcagcggaaatgttgtttgtttc 513  Q
    ||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  42926401 gcaggtgccatggtacccccccaacatttctatatatattagattaggcataattgtatcacaactacgtagttggcgcagtggaaatgttgtttgtttc 42926500  T
Q  514 tcttgcgtaggtcgcgggttcgtcccttccat 545  Q
    |||||||||||| ||||||||| ||| |||||    
T  42926501 tcttgcgtaggttgcgggttcgacccctccat 42926532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 591 - 745
Target Start/End: Original strand, 12209939 - 12210091
Alignment:
Q  591 ctcctataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttat 690  Q
    |||||||  |||||||||| ||||||||| || |||||||||||||| |||||||| ||||||||| ||||||||| ||||||||| ||| ||| || ||    
T  12209939 ctcctatgtggattcgaaccggcatcccctactctgcaatcaagcaaaataaaccattggaccagtcaacagttataatatttcttacacacagtttaat 12210038  T
Q  691 atatatttcatacaattctggcaccccccataaaatattccaagatccgccattg 745  Q
    |||||||||| ||||||||| ||  ||||||||||||||||||||||||||||||    
T  12210039 atatatttcaaacaattctgcca--ccccataaaatattccaagatccgccattg 12210091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 392 - 563
Target Start/End: Complemental strand, 35608647 - 35608482
Alignment:
Q  392 agtggcggatcttcatagggaccagcaggtgccatggt---atccccaacatttctatatattttagattaggcataattgtatcacaactacgcagttg 488  Q
    ||||||||||||||| ||| ||| ||||||||||||||   | ||||||  ||||||||||| ||||||||||||||||||||||||||||| | |||      
T  35608647 agtggcggatcttcacaggaacctgcaggtgccatggtggtacccccaaattttctatatatattagattaggcataattgtatcacaactatgtagt-- 35608550  T
Q  489 gcgcagcggaaatgttgtttgtttctcttgcgtaggtcgcgggttcgtcccttccatcctctttctgttatattt 563  Q
           ||||||| ||||||||| |||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  35608549 -------ggaaatgatgtttgtttttcttgcgtaggttgcgggttcgacccttccatcctctttcttttatattt 35608482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 391 - 502
Target Start/End: Original strand, 12209779 - 12209890
Alignment:
Q  391 cagtggcggatcttcatagggaccagcaggtgccatggtatccccaacatttctatatattttagattaggcataattgtatcacaactacgcagttggc 490  Q
    ||||||| ||||||||||| |||| |||| ||||||| || ||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||     
T  12209779 cagtggcagatcttcatagagacctgcagatgccatgatacccccaacttttctatatatattcgattaggcatacttgtatcacaactacgcagttggt 12209878  T
Q  491 gcagcggaaatg 502  Q
    |||| |||||||    
T  12209879 gcagtggaaatg 12209890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 601 - 742
Target Start/End: Complemental strand, 9197382 - 9197241
Alignment:
Q  601 gattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttca 700  Q
    |||||||||  ||| |||| ||||||||||||||||| ||||| ||| |||| |||||||| |||||||| ||  |||||  || || | ||||||||||    
T  9197382 gattcgaacccgcaccccctaccctgcaatcaagcaaaataaagcaccggacaagttaacaattatgatactttcttcacatagtttaaaatatatttca 9197283  T
Q  701 tacaattctggcaccccccataaaatattccaagatccgcca 742  Q
    |||||| ||||||||||| | ||||| || ||||||||||||    
T  9197282 tacaatactggcacccccaagaaaatttttcaagatccgcca 9197241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 591 - 718
Target Start/End: Complemental strand, 35608444 - 35608316
Alignment:
Q  591 ctcctataaggattcgaactggcatcccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttat 690  Q
    |||||||  |||||| ||| | ||||||| || |||||||||||||| || |||||||| |||| ||||||||||| ||||||  ||||| ||| || ||    
T  35608444 ctcctatgtggattcaaaccgacatcccctactctgcaatcaagcaaaatgaaccactgaaccaattaacagttataatatttacttcacacagtttaat 35608345  T
Q  691 atatatttcatac-aattctggcaccccc 718  Q
    ||||||||||| | |||||||||| ||||    
T  35608344 atatatttcatgcaaattctggcatcccc 35608316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 689 - 742
Target Start/End: Complemental strand, 32553742 - 32553689
Alignment:
Q  689 atatatatttcatacaattctggcaccccccataaaatattccaagatccgcca 742  Q
    |||||||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  32553742 atatatatttcatacaattctggcacccccaagaaaatatttcaagatccgcca 32553689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 625 - 736
Target Start/End: Original strand, 9702095 - 9702206
Alignment:
Q  625 tgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcaccccccataaa 724  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||||||| |||||  |  || |||||||||||||||| |||| ||||||||||||||    
T  9702095 tgcaatcaagcaaaataaaccactggaccagttaacaattgtgatatttccttcacaaaatttaatatatatttcatacatttctcgcaccccccataaa 9702194  T
Q  725 atattccaagat 736  Q
    ||||| ||||||    
T  9702195 atatttcaagat 9702206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 616 - 742
Target Start/End: Complemental strand, 49138055 - 49137929
Alignment:
Q  616 cccccaccctgcaatcaagcaatataaaccactggaccagttaacagttatgatatttctttcacccagctttatatatatttcatacaattctggcacc 715  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||  ||||| ||| || | |||||||||||||||| ||||||||    
T  49138055 cccctaccctgcaatcaagcaaaataaaccactggaccagttaacaattatgatactttcttcacacagtttaaaatatatttcatacaatactggcacc 49137956  T
Q  716 ccccataaaatattccaagatccgcca 742  Q
    ||| | ||| | || ||||||||||||    
T  49137955 cccaagaaattttttcaagatccgcca 49137929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 504 - 559
Target Start/End: Original strand, 9701966 - 9702021
Alignment:
Q  504 tgtttgtttctcttgcgtaggtcgcgggttcgtcccttccatcctctttctgttat 559  Q
    ||||||||| |||||||||||| ||||||||| |||||||||||||||||| ||||    
T  9701966 tgtttgtttttcttgcgtaggttgcgggttcgacccttccatcctctttcttttat 9702021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 21768622 - 21768658
Alignment:
Q  336 tgagaacatgaattatttgaacgtaaccacatgtgtc 372  Q
    |||||| ||||||||||||||||||||||||||||||    
T  21768622 tgagaaaatgaattatttgaacgtaaccacatgtgtc 21768658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 49138284 - 49138213
Alignment:
Q  395 ggcggatcttcatagggaccagcaggtgccatggtatcccc-aacatttctatatattttagattaggcata 465  Q
    ||||||||||| | |||||  ||||||||||||||| |||| ||  ||||||||||| ||||||||||||||    
T  49138284 ggcggatcttccttgggacaggcaggtgccatggtaccccccaagttttctatatatattagattaggcata 49138213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University