View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7722_low_10 (Length: 338)
Name: NF7722_low_10
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7722_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 28840889 - 28841202
Alignment:
| Q |
19 |
aagatgtagcaaaatatgtaaaacttttcggttcttgggcagcatcaacaagggtcataataaagtacgttgataagagttttgacaatccaacccatcc |
118 |
Q |
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| T |
28840889 |
aagatgtagcaaaatatgtaaaacttttcggttcttgggcagcatcaacaagggtcataataaagtacgttgataagagttttgacaatccaacccatcc |
28840988 |
T |
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| Q |
119 |
aaaacgttggcttcatacagatgcaaattgagtttggtgttataatggcactgtgccaatttagcattaatatgttgcttgcttattttatggtgttttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
28840989 |
aaaacgttggcttcatacagatgcaaattgagtttggtgttataatggcactgtgccaatttagcatt-atatg-tgcttgcttattttatggtgttttt |
28841086 |
T |
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| Q |
219 |
agtattacaaacaattatatatttcaatgttaaacttgttatgtattcttcttta----nnnnnnnnactttgatgactagcttctttttcattcatcca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28841087 |
agtattacaaacaattatatatttcaatgttaaacttgttatgtattcttctttatattttttttttactttgatgactagcttctttttcattcatcca |
28841186 |
T |
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| Q |
315 |
tacttttcccccttct |
330 |
Q |
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|||||||||||||||| |
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| T |
28841187 |
tacttttcccccttct |
28841202 |
T |
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