View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7722_low_11 (Length: 338)
Name: NF7722_low_11
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7722_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 139 - 332
Target Start/End: Complemental strand, 31086353 - 31086160
Alignment:
| Q |
139 |
attatttatatcctgagacgagatgaggtttctgagccatttatcaatctctttaagaagttttacaagccaataatacaccataaaacattaaacaagc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31086353 |
attatttatatcctgagacgagatgaggtttctgagtcatttatcaatctctttaagaagttttacaagccaataatacaccataaaacattaaacaagc |
31086254 |
T |
|
| Q |
239 |
ttgctatatatcaaaaatatttttaacaagctcaactcttccaaactacaaccattgaaaatagaggtacctaaataaattcaaagaataatct |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31086253 |
ttgctatatatcaaaaatatttttaacaagctgaactcttccaaactacaaccattgaaaatagaggtacctaaataaattcaaagaatgatct |
31086160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 31086516 - 31086389
Alignment:
| Q |
16 |
cagtatggtttgcaccaccaccacgacca--gttagatatacttgacctatatccatgacccatggggaataataaatcctccccgggagaataaacttt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
31086516 |
cagtatggtttgcaccaccaccacgaccacagttagatatacttgacctatatccatgacccatggggaataataaatcttccccggg------aacttt |
31086423 |
T |
|
| Q |
114 |
atggcaagcaaataaccaactttctattatttat |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
31086422 |
atggcaagcaaataaccaactttctattatttat |
31086389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University