View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7722_low_14 (Length: 307)
Name: NF7722_low_14
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7722_low_14 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 4150355 - 4150052
Alignment:
| Q |
1 |
aaagaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4150355 |
aaagaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgtttgatagaagagagattgttattgttcccactgagtttctg |
4150256 |
T |
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| Q |
101 |
aacaggattaccctgaaaatcaaagctacggagacttggagtagataactcaattttgcagcatcgataagtagtaaatgtatagattaatcttaactaa |
200 |
Q |
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| T |
4150255 |
aataggattacccttaaaatcaaagctacggagacttggagtagataactcgattttccaacattggtgagtaacaaatgtattgat---tcttaaataa |
4150159 |
T |
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| Q |
201 |
acaagtgtgtcacttgatatgaacaggttttgttcttcaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4150158 |
acaagtgtgtcacttgatatgaacaggttttgttcttgaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggt |
4150059 |
T |
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| Q |
301 |
tatcatc |
307 |
Q |
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|||||| |
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| T |
4150058 |
catcatc |
4150052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 4166124 - 4165824
Alignment:
| Q |
1 |
aaagaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4166124 |
aaagaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgtttgatagaagagagattgttattgttcccactgagtttctg |
4166025 |
T |
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| Q |
101 |
aacaggattaccctgaaaatcaaagctacggagacttggagtagataactcaattttgcagcatcgataagtagtaaatgtatagattaatcttaactaa |
200 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| || | | ||| |||||||| ||| |||||| ||| |
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| T |
4166024 |
aataggattacccttaaaatcaaagctacggagacttggagtagataactcgatttt---gcaacgttgaatagcaaatgtattgat---tcttaaataa |
4165931 |
T |
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| Q |
201 |
acaagtgtgtcacttgatatgaacaggttttgttcttcaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4165930 |
acaagtgtgtcacttgatatgaacaggttttgttcttcaacacaacagtgaatgatcaaacttttcaagctgttaaatgacgaaaagggctcagcacggt |
4165831 |
T |
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| Q |
301 |
tatcatc |
307 |
Q |
| |
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|||||| |
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| T |
4165830 |
catcatc |
4165824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 13485324 - 13485418
Alignment:
| Q |
53 |
tacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagata |
147 |
Q |
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||||||||| ||||||||||||||| | ||| ||||| ||||||||||| |||| |||| |||||||||||| | | ||||||||||||||||| |
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| T |
13485324 |
tacatgtttgatagaagagagattgctcttgatcccatggagtttctgaataggaataccatgaaaatcaaaggtgcagagacttggagtagata |
13485418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 13490285 - 13490379
Alignment:
| Q |
53 |
tacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagata |
147 |
Q |
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||||||||| |||||||||||||| | ||| ||| | ||||||||||| |||| |||| ||||| |||||| ||| |||||||||||||||| |
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| T |
13490285 |
tacatgtttaatagaagagagatttctcttgctccgatggagtttctgaataggaataccatgaaactcaaaggtacaaagacttggagtagata |
13490379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 25597576 - 25597540
Alignment:
| Q |
122 |
aaagctacggagacttggagtagataactcaattttg |
158 |
Q |
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|||| |||| ||||||||||||||||||||||||||| |
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| T |
25597576 |
aaagttacgtagacttggagtagataactcaattttg |
25597540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 32414368 - 32414267
Alignment:
| Q |
40 |
ctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttgg |
139 |
Q |
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|||| |||||||| |||||||| ||||||||||||||| | ||| |||| |||||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
32414368 |
ctacgtcaattttcacatgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttgg |
32414269 |
T |
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| Q |
140 |
ag |
141 |
Q |
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|| |
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| T |
32414268 |
ag |
32414267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 14288277 - 14288381
Alignment:
| Q |
54 |
acatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagataactcaa |
153 |
Q |
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|||||||| ||||||||||||||| | || |||||| |||||| |||| |||| ||||| ||||| |||| ||| |||||||||||| |||| ||||| |
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| T |
14288277 |
acatgtttgatagaagagagattgattttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttggagtggatagctcaa |
14288376 |
T |
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| Q |
154 |
ttttg |
158 |
Q |
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|||| |
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| T |
14288377 |
atttg |
14288381 |
T |
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