View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7722_low_21 (Length: 248)

Name: NF7722_low_21
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7722_low_21
NF7722_low_21
[»] chr6 (35 HSPs)
chr6 (18-248)||(27674924-27675154)
chr6 (18-248)||(26805084-26805314)
chr6 (23-248)||(28794997-28795222)
chr6 (24-248)||(27715850-27716074)
chr6 (73-248)||(26658620-26658795)
chr6 (73-248)||(26764591-26764766)
chr6 (183-248)||(27590476-27590541)
chr6 (72-248)||(27608470-27608646)
chr6 (73-248)||(27602073-27602248)
chr6 (74-248)||(27681596-27681770)
chr6 (74-248)||(25485629-25485803)
chr6 (24-194)||(27695995-27696165)
chr6 (23-248)||(28788973-28789198)
chr6 (149-248)||(26638116-26638215)
chr6 (149-248)||(26744082-26744181)
chr6 (72-194)||(26649113-26649235)
chr6 (72-194)||(26755081-26755203)
chr6 (73-244)||(26886747-26886918)
chr6 (74-248)||(25547616-25547793)
chr6 (74-248)||(25513514-25513688)
chr6 (149-248)||(26851224-26851323)
chr6 (149-248)||(26961825-26961924)
chr6 (74-248)||(26145636-26145810)
chr6 (74-248)||(26980049-26980222)
chr6 (150-248)||(27662722-27662820)
chr6 (72-248)||(26625766-26625945)
chr6 (72-248)||(26731743-26731922)
chr6 (81-248)||(25076539-25076706)
chr6 (24-118)||(27703697-27703791)
chr6 (149-194)||(26952332-26952377)
chr6 (28-189)||(31287169-31287333)
chr6 (215-248)||(31287359-31287392)
chr6 (149-209)||(25582421-25582481)
chr6 (149-209)||(26058633-26058693)
chr6 (149-209)||(26078603-26078663)
[»] scaffold0419 (1 HSPs)
scaffold0419 (23-245)||(10123-10345)
[»] scaffold0349 (1 HSPs)
scaffold0349 (24-248)||(15871-16095)
[»] scaffold0277 (2 HSPs)
scaffold0277 (23-248)||(2038-2263)
scaffold0277 (23-248)||(11001-11226)
[»] chr8 (2 HSPs)
chr8 (79-248)||(29271189-29271358)
chr8 (132-248)||(22023973-22024089)
[»] chr1 (3 HSPs)
chr1 (78-248)||(265681-265851)
chr1 (156-248)||(28124974-28125066)
chr1 (151-189)||(26138716-26138754)
[»] chr4 (8 HSPs)
chr4 (86-189)||(18687063-18687166)
chr4 (149-189)||(18682171-18682211)
chr4 (85-189)||(18696857-18696961)
chr4 (85-189)||(18721528-18721632)
chr4 (149-189)||(18726447-18726487)
chr4 (153-189)||(18728950-18728986)
chr4 (72-189)||(18677014-18677131)
chr4 (149-189)||(18652932-18652972)


Alignment Details
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 27675154 - 27674924
Alignment:
Q  18 gatagaatgtattctatagtgttttcaaaggtgagaaagcttagtatctgcaagtgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtg 117  Q
    |||||||||||||||| ||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  27675154 gatagaatgtattctaaagtgttttcaaaggtgacaaagcttagaatctacgagtgcaacctctcagatgaatatctccaaatagttcttaagtggtgtg 27675055  T
Q  118 tgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattg 217  Q
    | |||||  ||   |||| ||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||  ||| ||  |||| || | ||    
T  27675054 ttaatgtggaattgctagacttatcacataacaatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttaagcatcttggtttgcattactg 27674955  T
Q  218 caaatctcttgaggaaattagagggattcca 248  Q
    |   |||||||||||||||||||||||||||    
T  27674954 ctcttctcttgaggaaattagagggattcca 27674924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 26805084 - 26805314
Alignment:
Q  18 gatagaatgtattctatagtgttttcaaaggtgagaaagcttagtatctgcaagtgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtg 117  Q
    |||| ||||||||||||| |||||||||| |||| | |||||||| ||    | |||||||||||||||||||  |||||||||||||||||||| ||||    
T  26805084 gataaaatgtattctataatgttttcaaatgtgacagagcttagtctcaaagattgcaacctctcagatgaatacctccaaatagttcttaagtggtgtg 26805183  T
Q  118 tgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattg 217  Q
    | |||||| |||||||||  |||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||  ||| || |||||| | | ||    
T  26805184 ttaatgttgaagaactagagttatcaaacaacaatttcaaaattcttcctgagtgtcttagtgaatgtcaccatcttaagcatcttgatttgtcttactg 26805283  T
Q  218 caaatctcttgaggaaattagagggattcca 248  Q
    || ||||||||||||||||||||||||||||    
T  26805284 cacatctcttgaggaaattagagggattcca 26805314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 28794997 - 28795222
Alignment:
Q  23 aatgtattctatagtgttttcaaaggtgagaaagcttagtatctgcaagtgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaat 122  Q
    ||||||||||||||||||||||||  |||||||||||||| || || | ||||||||||||||||||||||||| |||| |||| ||||| ||||| |||    
T  28794997 aatgtattctatagtgttttcaaatttgagaaagcttagtctcagcgactgcaacctctcagatgaatgtctcccaatatttctcaagtggtgtgttaat 28795096  T
Q  123 gttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaat 222  Q
    || |||   |||| |||||||   | |||||||||| || ||||||||||||||||||||||| ||| ||||| | |  |||  ||| || | ||||| |    
T  28795097 gtgaaattgctagacttatcatggaacaatttcaaatttattcctgagtgccttagtgaatgttaccttcttaataaccttagattggataactgcaagt 28795196  T
Q  223 ctcttgaggaaattagagggattcca 248  Q
    |||| |||||||||||||||||||||    
T  28795197 ctctcgaggaaattagagggattcca 28795222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 248
Target Start/End: Complemental strand, 27716074 - 27715850
Alignment:
Q  24 atgtattctatagtgttttcaaaggtgagaaagcttagtatctgcaagtgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatg 123  Q
    |||||||| |||||||||||||| |||| | |||||| | ||| | | ||||||||||||||||||||||||| || |||||| ||||| ||||| |||     
T  27716074 atgtattcaatagtgttttcaaatgtgacacagcttactctctaccattgcaacctctcagatgaatgtctccgaagagttctcaagtggtgtgttaata 27715975  T
Q  124 ttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatc 223  Q
    | | |   |||  ||||| | | | ||||||||||||||||||||||||||||||||||||||||||||||  | | |||||| ||    | ||| | ||    
T  27715974 tgacatctctaaacttattatatagcaatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttgttgaaattaatgtggggtactgcgagtc 27715875  T
Q  224 tcttgaggaaattagagggattcca 248  Q
     ||||||||||||||||||||||||    
T  27715874 ccttgaggaaattagagggattcca 27715850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 248
Target Start/End: Original strand, 26658620 - 26658795
Alignment:
Q  73 gcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtg 172  Q
    |||| ||||||||||| ||||| | |||| |||| ||||| ||||| ||||| ||| | |||  ||||||||| | ||||||||||||||| || |||||    
T  26658620 gcaatctctcagatgactgtcttccaatacttctcaagtggtgtgttaatgtgaaatatctaaacttatcaaagaacaatttcaaaattctacccgagtg 26658719  T
Q  173 ccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    ||||||||||||||||| |||||  ||| || ||||| || | ||| ||| |||||||||||||||||||||||||    
T  26658720 ccttagtgaatgtcaccttcttaagcatctttatttggataaatgccaatatcttgaggaaattagagggattcca 26658795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 248
Target Start/End: Original strand, 26764591 - 26764766
Alignment:
Q  73 gcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtg 172  Q
    |||| ||||||||||| ||||| | |||| |||| ||||| ||||| ||||| ||| | |||  ||||||||| | ||||||||||||||| || |||||    
T  26764591 gcaatctctcagatgactgtcttccaatacttctcaagtggtgtgttaatgtgaaatatctaaacttatcaaagaacaatttcaaaattctacccgagtg 26764690  T
Q  173 ccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    ||||||||||||||||| |||||  ||| || ||||| || | ||| ||| |||||||||||||||||||||||||    
T  26764691 ccttagtgaatgtcaccttcttaagcatctttatttggataaatgccaatatcttgaggaaattagagggattcca 26764766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 27590541 - 27590476
Alignment:
Q  183 tgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27590541 tgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 27590476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 248
Target Start/End: Complemental strand, 27608646 - 27608470
Alignment:
Q  72 tgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagt 171  Q
    ||||||||||||||||||||||||| |||| |||| ||||| | ||| ||||| | |   |||| ||||||| | | |||||||||||||||||||||||    
T  27608646 tgcaacctctcagatgaatgtctcccaatacttctcaagtggtttgttaatgtgacatgtctagacttatcatatagcaatttcaaaattcttcctgagt 27608547  T
Q  172 gccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    |||||||||||||||||||||||  ||  |||| | ||   || ||| | || ||||||||||||||||||||||||    
T  27608546 gccttagtgaatgtcaccatcttgttctaattactgtgagggactgcgagtcccttgaggaaattagagggattcca 27608470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 248
Target Start/End: Complemental strand, 27602248 - 27602073
Alignment:
Q  73 gcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtg 172  Q
    |||||||||||||||||| ||||| |||| |||| | ||| ||||| |||||  || | |||||||||||  | | ||||||||||||||||||||||||    
T  27602248 gcaacctctcagatgaatttctccgaatacttctaatgtggtgtgttaatgtggaaaatctagtcttatctgagagcaatttcaaaattcttcctgagtg 27602149  T
Q  173 ccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    ||||||||||||||||| |||||   | ||| || || |||  ||||| | ||||||||||||||||||| |||||    
T  27602148 ccttagtgaatgtcaccttcttaaaaacatttatgtggatggctgcaagtttcttgaggaaattagagggtttcca 27602073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 27681596 - 27681770
Alignment:
Q  74 caacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgc 173  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||||| ||| | | | | |||| |||||||   | |||||||||||||||||||||||||    
T  27681596 caacctctcagatgaatgtctcccaatagttctcaagtggtgtgttaatatgacacatctagacttatcatttagcaatttcaaaattcttcctgagtgc 27681695  T
Q  174 cttagtgaatgtcaccatcttagtcatattaatttgtatg-attgcaaatctcttgaggaaattagagggattcca 248  Q
    ||| |||||||||||||||||  | | |||||| || |||   ||| | |||||||||||||||||||||||||||    
T  27681696 cttcgtgaatgtcaccatcttgttgaaattaatgtg-atgtgctgcgagtctcttgaggaaattagagggattcca 27681770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 25485629 - 25485803
Alignment:
Q  74 caacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgc 173  Q
    ||||||||||||||||||||||| |||| |||| ||||| | ||| ||||| | |   |||| ||||||  | | |||||||| ||||||||| ||||||    
T  25485629 caacctctcagatgaatgtctcccaatacttctcaagtggtttgttaatgtgacatttctagacttatcgcagaacaatttcacaattcttcccgagtgc 25485728  T
Q  174 cttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    ||| |||||||||||| |||||  ||| || ||||| |  | |||||  ||||||||||||||||||||||||||    
T  25485729 cttggtgaatgtcaccgtcttaagcatctttatttgaagaagtgcaaggctcttgaggaaattagagggattcca 25485803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 27696165 - 27695995
Alignment:
Q  24 atgtattctatagtgttttcaaaggtgagaaagcttagtatctgcaagtgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatg 123  Q
    |||||||| ||||||||||||||  ||| |||||||  | ||| | | ||| ||||||||||||||||||||| |||| |||| ||||| ||||| |||     
T  27696165 atgtattcaatagtgttttcaaatatgacaaagctttctctcttcgattgctacctctcagatgaatgtctcccaatacttctcaagtggtgtgttaata 27696066  T
Q  124 ttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtgaatgtcaccatctt 194  Q
    | | | | ||||  |||||| | | | |||||||||||||||| ||||||||||||||| |||||||||||    
T  27696065 tgacatatctagatttatcatatagcgatttcaaaattcttccagagtgccttagtgaaagtcaccatctt 27695995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 28788973 - 28789198
Alignment:
Q  23 aatgtattctatagtgttttcaaaggtgagaaagcttagtatctgcaagtgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaat 122  Q
    |||||||||||||||||||||||| |||| ||| |||  | ||   || ||||| ||||||||||||||||||| |||| |||| ||||| |||||  ||    
T  28788973 aatgtattctatagtgttttcaaaagtgacaaatcttgttctcaataattgcaagctctcagatgaatgtctcccaatatttctcaagtggtgtgtttat 28789072  T
Q  123 gttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaat 222  Q
    || | | | |||| |||||||   | |||||||||| || ||||||||||||||||||||||| ||| ||||  |    |||  ||| || | ||||| |    
T  28789073 gtgacatatctagacttatcatggaacaatttcaaacttattcctgagtgccttagtgaatgttaccttctttctagccttagattggataactgcaagt 28789172  T
Q  223 ctcttgaggaaattagagggattcca 248  Q
    |||| |||||||||||||||||||||    
T  28789173 ctctggaggaaattagagggattcca 28789198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 26638116 - 26638215
Alignment:
Q  149 caatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||     |||||||| |||| |||||  ||||||| ||||||||||||||||||    
T  26638116 caatttcaaaattcttcctgagtgccttagtgtatgtcaccttcttaggatccttaatttggatgaatgcaaggctcttgaagaaattagagggattcca 26638215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 26744082 - 26744181
Alignment:
Q  149 caatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||     |||||||| |||| |||||  ||||||| ||||||||||||||||||    
T  26744082 caatttcaaaattcttcctgagtgccttagtgtatgtcaccttcttaggatccttaatttggatgaatgcaaggctcttgaagaaattagagggattcca 26744181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 194
Target Start/End: Original strand, 26649113 - 26649235
Alignment:
Q  72 tgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagt 171  Q
    ||||||||||  |||||| |||||| |||| |||| || || ||||| ||| | ||| | ||||||||| |||| | |||||||||||||||||| ||||    
T  26649113 tgcaacctctttgatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagt 26649212  T
Q  172 gccttagtgaatgtcaccatctt 194  Q
     ||||||||||||||||||||||    
T  26649213 tccttagtgaatgtcaccatctt 26649235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 194
Target Start/End: Original strand, 26755081 - 26755203
Alignment:
Q  72 tgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagt 171  Q
    ||||||||||  |||||| |||||| |||| |||| || || ||||| ||| | ||| | ||||||||| |||| | |||||||||||||||||| ||||    
T  26755081 tgcaacctctttgatgaaagtctcctaataattctcaaatggtgtgttaatctgaaaaatctagtcttagcaaagaacaatttcaaaattcttcccgagt 26755180  T
Q  172 gccttagtgaatgtcaccatctt 194  Q
     ||||||||||||||||||||||    
T  26755181 tccttagtgaatgtcaccatctt 26755203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 244
Target Start/End: Original strand, 26886747 - 26886918
Alignment:
Q  73 gcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtg 172  Q
    |||| ||||||  ||||||||| | |||  |||| ||||| | ||| ||||| ||| | |||| ||||||||| | |||||||||||||||||| |||||    
T  26886747 gcaatctctcatttgaatgtcttccaatgcttctcaagtggtttgttaatgtgaaacatctagacttatcaaagaacaatttcaaaattcttcccgagtg 26886846  T
Q  173 ccttagtgaatgtcaccatcttagtcata-ttaatttgtatgattgcaaatctcttgaggaaattagagggat 244  Q
    |||||  |||||||||| ||||||  ||| || | ||| || ||||||| |||||||||||||||||||||||    
T  26886847 ccttaaggaatgtcaccttcttag-gatacttgaattgaatcattgcaagtctcttgaggaaattagagggat 26886918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 25547616 - 25547793
Alignment:
Q  74 caacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaacc---aatttcaaaattcttcctgag 170  Q
    ||||||||||||||||||||||| |||| |||| ||||| | ||| ||||| | |   |||| ||||||  | | |   ||||||| |||||||||||||    
T  25547616 caacctctcagatgaatgtctcccaatacttctcaagtggtttgttaatgtgacatttctagacttatcggagaacgataatttcacaattcttcctgag 25547715  T
Q  171 tgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    |||||||| ||||||||||||||||  ||  || ||||| |  | ||||| | |||||||||||||||||||||||||    
T  25547716 tgccttagcgaatgtcaccatcttaaacaactttatttgaagaactgcaattttcttgaggaaattagagggattcca 25547793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 25513514 - 25513688
Alignment:
Q  74 caacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgc 173  Q
    |||| |||||||||||||||||| |||| |||| ||||| | ||| ||||| | |   |||| ||||||  | | |||||||| ||||||||| ||||||    
T  25513514 caacgtctcagatgaatgtctcccaatacttctcaagtggtttgttaatgtgacatttctagacttatcggagaacaatttcacaattcttcccgagtgc 25513613  T
Q  174 cttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    ||| |||||| ||||| |||||  ||| || ||||| |   ||||||  ||||||||||||||||||||||||||    
T  25513614 cttggtgaatatcaccgtcttaagcatctttatttgaagttttgcaaggctcttgaggaaattagagggattcca 25513688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 26851224 - 26851323
Alignment:
Q  149 caatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||  |  ||   |||||||  ||||| | |||||||||||||||||||||||||    
T  26851224 caatttaaaaattcttcccgagtgccttagtgaatgtcaccgtcttagggagcttgtattgtatggctgcaattttcttgaggaaattagagggattcca 26851323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 26961825 - 26961924
Alignment:
Q  149 caatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    |||||||||||||||||| |||||||||||||||||||||| |||| |  |  ||   ||| |||| ||||| | |||||||||||||||||||||||||    
T  26961825 caatttcaaaattcttcccgagtgccttagtgaatgtcaccgtcttggggagcttgtgttggatgactgcaagtttcttgaggaaattagagggattcca 26961924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 26145636 - 26145810
Alignment:
Q  74 caacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgc 173  Q
    ||||||||| ||||||||||||| |||| |||| ||||| | ||| ||||| | |   |||| ||||||  | | | |||||| ||||||||| ||||||    
T  26145636 caacctctcggatgaatgtctcccaatacttctcaagtggtttgttaatgtgacatttctagacttatcggagaactatttcacaattcttcccgagtgc 26145735  T
Q  174 cttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    ||| |||||||||||| |||||  ||| || ||||| |   |||| |  ||||||||||||||||||||||||||    
T  26145736 cttggtgaatgtcaccgtcttaagcatctttatttgaagttttgcgaggctcttgaggaaattagagggattcca 26145810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 26980049 - 26980222
Alignment:
Q  74 caacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgc 173  Q
    ||||||||||||||||||||||| |||| |||| ||||| | ||| ||||| | | |  ||  ||||  || ||| |||||||||||||| |||||||||    
T  26980049 caacctctcagatgaatgtctcccaatacttctcaagtggtttgttaatgtgacatatttaaacttaagaacaac-aatttcaaaattctacctgagtgc 26980147  T
Q  174 cttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    |||| |||||||||||||||| | ||  ||   ||| |||  ||||| | ||||||||||||||||||| |||||    
T  26980148 cttaatgaatgtcaccatcttcggcagcttgtattggatggctgcaagtttcttgaggaaattagagggtttcca 26980222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 27662820 - 27662722
Alignment:
Q  150 aatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    |||||||||||||||||  |||||||||||||||||||| |||||   ||| || ||||| || | ||  | |||||||||||||||||||||||||||    
T  27662820 aatttcaaaattcttcccaagtgccttagtgaatgtcactatcttgagcatctttatttggattactgtgagtctcttgaggaaattagagggattcca 27662722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 248
Target Start/End: Original strand, 26625766 - 26625945
Alignment:
Q  72 tgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaa-aac--caatttcaaaattcttcctg 168  Q
    ||||||||||||||||||| ||||| |||| |||| ||||| | ||| ||||| ||| | |||| ||||||  | |||  |  | |||||||||||||||    
T  26625766 tgcaacctctcagatgaatatctcccaataattctcaagtggtttgttaatgtgaaacatctagacttatcggagaacgtcggtatcaaaattcttcctg 26625865  T
Q  169 agtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    | ||||||| ||||||||||| ||||||     |||||||  |||  ||| | |||||||||||||||||||||||||||    
T  26625866 aatgccttaatgaatgtcaccttcttaggatccttaatttagatggctgcgagtctcttgaggaaattagagggattcca 26625945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 248
Target Start/End: Original strand, 26731743 - 26731922
Alignment:
Q  72 tgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaa-aac--caatttcaaaattcttcctg 168  Q
    ||||||||||||||||||| ||||| |||| |||| ||||| | ||| ||||| ||| | |||| ||||||  | |||  |  | |||||||||||||||    
T  26731743 tgcaacctctcagatgaatatctcccaataattctcaagtggtttgttaatgtgaaacatctagacttatcggagaacgtcggtatcaaaattcttcctg 26731842  T
Q  169 agtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    | ||||||| ||||||||||| ||||||     |||||||  |||  ||| | |||||||||||||||||||||||||||    
T  26731843 aatgccttaatgaatgtcaccttcttaggatccttaatttagatggctgcgagtctcttgaggaaattagagggattcca 26731922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 248
Target Start/End: Original strand, 25076539 - 25076706
Alignment:
Q  81 tcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtg 180  Q
    |||||||||||||| | |||| |||| ||||| | ||| ||||| ||| | |||| ||| || || |   |||||||||||||||| |||||||||||||    
T  25076539 tcagatgaatgtcttccaatacttctcaagtggtttgttaatgtgaaatatctagacttgtctaacaatgatttcaaaattcttcccgagtgccttagtg 25076638  T
Q  181 aatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    |||||| ||||||||   || |||| ||| || |||||    ||||||| ||||||||| ||||||||    
T  25076639 aatgtcgccatcttaaggatcttaaattggattattgctgggctcttgaagaaattagatggattcca 25076706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 27703791 - 27703697
Alignment:
Q  24 atgtattctatagtgttttcaaaggtgagaaagcttagtatctgcaagtgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgt 118  Q
    |||||||| |||||||||| ||| |||| | | |||| | ||||| | ||||||||||||||||||||||||| |||| |||| ||||| |||||    
T  27703791 atgtattcaatagtgtttttaaatgtgacacaacttactctctgccattgcaacctctcagatgaatgtctcccaatacttctcaagtggtgtgt 27703697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 26952332 - 26952377
Alignment:
Q  149 caatttcaaaattcttcctgagtgccttagtgaatgtcaccatctt 194  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||    
T  26952332 caatttcaaaattcttcccgagtgccttagtgaatgccaccatctt 26952377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 31287169 - 31287333
Alignment:
Q  28 attctatagtgttttcaaaggtgagaaagcttagtatctgcaagtgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaa 127  Q
    ||||||||||||||||||| |||| | |||||||| ||   || ||||||||||||||||||||| | | |||| |||| ||||| | ||| ||||| ||    
T  31287169 attctatagtgttttcaaatgtgacacagcttagtctccaaaattgcaacctctcagatgaatgtttaccaatacttctcaagtggtttgttaatgtgaa 31287268  T
Q  128 agaactagtcttatc-aaaaac--caatttcaaaattcttcctgagtgccttagtgaatgtcacc 189  Q
    |   |||| ||||||  | |||  ||||||||| |||||||| ||||| |||| |||||||||||    
T  31287269 aaggctagacttatcgcataacttcaatttcaatattcttcccgagtgtcttaatgaatgtcacc 31287333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 31287359 - 31287392
Alignment:
Q  215 ttgcaaatctcttgaggaaattagagggattcca 248  Q
    |||||| |||||||||||||||||||||||||||    
T  31287359 ttgcaagtctcttgaggaaattagagggattcca 31287392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 25582421 - 25582481
Alignment:
Q  149 caatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttg 209  Q
    |||||||| ||||||||| ||||||||| |||||||||||  |||||  ||| ||||||||    
T  25582421 caatttcacaattcttcccgagtgccttggtgaatgtcactgtcttatgcatcttaatttg 25582481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 26058633 - 26058693
Alignment:
Q  149 caatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttg 209  Q
    |||||||| ||||||||| ||||||||| |||||||||||  |||||  ||| ||||||||    
T  26058633 caatttcacaattcttcccgagtgccttggtgaatgtcactgtcttatgcatcttaatttg 26058693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 26078603 - 26078663
Alignment:
Q  149 caatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttg 209  Q
    |||||||| ||||||||| ||||||||| |||||||||||  |||||  ||| ||||||||    
T  26078603 caatttcacaattcttcccgagtgccttggtgaatgtcactgtcttatgcatcttaatttg 26078663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 245
Target Start/End: Original strand, 10123 - 10345
Alignment:
Q  23 aatgtattctatagtgttttcaaaggtgagaaagcttagtatctgcaagtgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaat 122  Q
    |||||||||||||||||||||||| |||| ||| |||  | ||   || ||||| ||||||||||||||||||| |||| |||| ||||| ||||| |||    
T  10123 aatgtattctatagtgttttcaaaagtgacaaatcttgttctcaataattgcaagctctcagatgaatgtctcccaatatttctcaagtggtgtgttaat 10222  T
Q  123 gttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaat 222  Q
    || |||   |||| ||||||||  | |||||||||| || ||||||||||||||||||||||||||| ||||| | |  |||  ||| || | ||||| |    
T  10223 gtgaaattgctagacttatcaaggaacaatttcaaacttattcctgagtgccttagtgaatgtcaccttcttaataaccttatattggataactgcaagt 10322  T
Q  223 ctcttgaggaaattagagggatt 245  Q
    |||| ||||||||||||||||||    
T  10323 ctctggaggaaattagagggatt 10345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 248
Target Start/End: Original strand, 15871 - 16095
Alignment:
Q  24 atgtattctatagtgttttcaaaggtgagaaagcttagtatctgcaagtgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatg 123  Q
    |||||||| |||||||||||||| |||| | |||||| | ||| | | ||||||||||||||||||||||||| || |||||| ||||| ||||| |||     
T  15871 atgtattcaatagtgttttcaaatgtgacacagcttactctctaccattgcaacctctcagatgaatgtctccgaagagttctcaagtggtgtgttaata 15970  T
Q  124 ttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatc 223  Q
    | | |   |||  ||||| | | | ||||||||||||||||||||||||||||||||||||||||||||||  | | |||||| ||    | ||| | ||    
T  15971 tgacatctctaaacttattatatagcaatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttgttgaaattaatgtggggtactgcgagtc 16070  T
Q  224 tcttgaggaaattagagggattcca 248  Q
     ||||||||||||||||||||||||    
T  16071 ccttgaggaaattagagggattcca 16095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 2263 - 2038
Alignment:
Q  23 aatgtattctatagtgttttcaaaggtgagaaagcttagtatctgcaagtgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaat 122  Q
    |||||||||||||||||||||||| |||| ||| |||| | ||    | ||||| ||||||||||||||||||| |||| |||| ||||| ||||| |||    
T  2263 aatgtattctatagtgttttcaaaagtgacaaatcttattctccatgattgcaagctctcagatgaatgtctcccaatatttctcaagtggtgtgttaat 2164  T
Q  123 gttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaat 222  Q
    || | |   |||| ||||||| | | |||||||||| || ||||||||||||||||||||||||||| ||||| |    |||  ||| || | ||||| |    
T  2163 gtgacatctctagacttatcatataacaatttcaaacttattcctgagtgccttagtgaatgtcaccttcttaatatccttatattggataactgcaagt 2064  T
Q  223 ctcttgaggaaattagagggattcca 248  Q
    |||| |||||||||||||||||||||    
T  2063 ctctggaggaaattagagggattcca 2038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 11226 - 11001
Alignment:
Q  23 aatgtattctatagtgttttcaaaggtgagaaagcttagta-tctgcaagtgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaa 121  Q
    |||||||||||||||||||||||| |||| ||| || || | |||  || ||||| ||||||||||||||||||| |||| |||| ||||| |||||  |    
T  11226 aatgtattctatagtgttttcaaaagtgacaaaact-agaactctataattgcaagctctcagatgaatgtctcccaatatttctcaagtggtgtgttta 11128  T
Q  122 tgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaa 221  Q
    ||| | | | |||| |||||||   | |||||||||| || ||||||||||||||||||||||| ||| ||||  |    |||  ||| || | |||||     
T  11127 tgtgacatatctagacttatcatggaacaatttcaaacttattcctgagtgccttagtgaatgttaccttctttctagccttagattggataactgcaag 11028  T
Q  222 tctcttgaggaaattagagggattcca 248  Q
    ||||| |||||||||||||||||||||    
T  11027 tctctggaggaaattagagggattcca 11001  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 248
Target Start/End: Complemental strand, 29271358 - 29271189
Alignment:
Q  79 tctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttag 178  Q
    |||||||||||||||||| |||| |||| ||||| ||||| ||||| | | | |||| |||||||   | | ||||||||||||||||||||||||||||    
T  29271358 tctcagatgaatgtctcccaatacttctcaagtggtgtgttaatgtgacatatctagacttatcatttaactatttcaaaattcttcctgagtgccttag 29271259  T
Q  179 tgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    |||||||| |||||||  | | |||||| ||  ||  ||| | |||||| ||||||||||||||||||||    
T  29271258 tgaatgtctccatctttataaaattaatatgagtggctgccattctcttaaggaaattagagggattcca 29271189  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 248
Target Start/End: Original strand, 22023973 - 22024089
Alignment:
Q  132 ctagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgagg 231  Q
    |||| |||||| || | |||||||||||||||||| |||||||||| ||||||||||| | || |   | |||||||| ||   ||||||||| ||||||    
T  22023973 ctagacttatcgaataacaatttcaaaattcttcccgagtgccttaatgaatgtcaccttgtttgggttcttaatttggatcgctgcaaatctgttgagg 22024072  T
Q  232 aaattagagggattcca 248  Q
    |||||||||||||||||    
T  22024073 aaattagagggattcca 22024089  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 248
Target Start/End: Complemental strand, 265851 - 265681
Alignment:
Q  78 ctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgcctta 177  Q
    ||||||||||||||||||| |||| |||| ||||| ||||| ||||| | | | |||  ||||   || | ||| ||||||| |||||||||||||||||    
T  265851 ctctcagatgaatgtctcccaatacttctcaagtggtgtgttaatgtgatatatctaaacttaatgaagagcaagttcaaaactcttcctgagtgcctta 265752  T
Q  178 gtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    |||||||||||||||||  | | |||||  ||  | | ||||| | |||||||||||||||||||||||||    
T  265751 gtgaatgtcaccatcttgttaaaattaacgtgagttactgcaagtatcttgaggaaattagagggattcca 265681  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 28125066 - 28124974
Alignment:
Q  156 aaaattcttcctgagtgccttagtgaatgtcaccatcttagtcatattaatttgtatgattgcaaatctcttgaggaaattagagggattcca 248  Q
    ||||||||||| ||||| |||||||||||||||| ||| |      |||  ||| |||| ||||| |||||||||||||||||||||||||||    
T  28125066 aaaattcttcccgagtgtcttagtgaatgtcaccttctaaaggtccttagattggatgactgcaagtctcttgaggaaattagagggattcca 28124974  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 26138716 - 26138754
Alignment:
Q  151 atttcaaaattcttcctgagtgccttagtgaatgtcacc 189  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  26138716 attttaaaattcttcctgagtgccttaatgaatgtcacc 26138754  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 18687166 - 18687063
Alignment:
Q  86 tgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtgaatgt 185  Q
    ||||||||||||||||||||||||||  ||||| ||||| |||   |||  ||||||      |||||||||||||||||| ||||||||||||||||||    
T  18687166 tgaatgtctccaaatagttcttaagtcgtgtgttaatgtgaaatttctaaacttatcctttggcaatttcaaaattcttcccgagtgccttagtgaatgt 18687067  T
Q  186 cacc 189  Q
    ||||    
T  18687066 cacc 18687063  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 18682211 - 18682171
Alignment:
Q  149 caatttcaaaattcttcctgagtgccttagtgaatgtcacc 189  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  18682211 caatttcaaaattcttcccgagtgccttagtgaatgtcacc 18682171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 18696961 - 18696857
Alignment:
Q  85 atgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtgaatg 184  Q
    |||||||||||||||||||||| ||||  ||||| ||||| ||| | |||  ||||||      ||| |||||||||||||| |||||||||||||||||    
T  18696961 atgaatgtctccaaatagttctcaagtcgtgtgttaatgtgaaatatctaaacttatcccttggcaaattcaaaattcttcccgagtgccttagtgaatg 18696862  T
Q  185 tcacc 189  Q
    |||||    
T  18696861 tcacc 18696857  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 18721632 - 18721528
Alignment:
Q  85 atgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagtgccttagtgaatg 184  Q
    |||||||||||||||||||||| ||||  ||||| ||||| |||   |||| ||||||      | ||||||||||||||||||||||||||| ||||||    
T  18721632 atgaatgtctccaaatagttctcaagtcgtgtgttaatgtgaaatttctagacttatcctttggctatttcaaaattcttcctgagtgccttaatgaatg 18721533  T
Q  185 tcacc 189  Q
    |||||    
T  18721532 tcacc 18721528  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 18726487 - 18726447
Alignment:
Q  149 caatttcaaaattcttcctgagtgccttagtgaatgtcacc 189  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  18726487 caatttcaaaattcttcccgagtgccttagtgaatgtcacc 18726447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 18728986 - 18728950
Alignment:
Q  153 ttcaaaattcttcctgagtgccttagtgaatgtcacc 189  Q
    |||||||||||||||||||||||||||||||||||||    
T  18728986 ttcaaaattcttcctgagtgccttagtgaatgtcacc 18728950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 18677131 - 18677014
Alignment:
Q  72 tgcaacctctcagatgaatgtctccaaatagttcttaagtgttgtgtgaatgttaaagaactagtcttatcaaaaaccaatttcaaaattcttcctgagt 171  Q
    ||||| ||| || ||||| |||||||||||||||| ||||  ||||| ||||| |||   |||| ||||||      |||||||||||||||||| ||||    
T  18677131 tgcaatctcccatatgaaggtctccaaatagttctcaagttgtgtgttaatgtgaaatttctagacttatcctttggcaatttcaaaattcttcccgagt 18677032  T
Q  172 gccttagtgaatgtcacc 189  Q
    |||||| |||||||||||    
T  18677031 gccttaatgaatgtcacc 18677014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 18652972 - 18652932
Alignment:
Q  149 caatttcaaaattcttcctgagtgccttagtgaatgtcacc 189  Q
    |||||||||||||||||| |||| ||||| |||||||||||    
T  18652972 caatttcaaaattcttcccgagtaccttaatgaatgtcacc 18652932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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