View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7722_low_22 (Length: 241)

Name: NF7722_low_22
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7722_low_22
NF7722_low_22
[»] chr4 (8 HSPs)
chr4 (14-137)||(22180836-22180959)
chr4 (14-137)||(4168710-4168833)
chr4 (14-137)||(21097470-21097593)
chr4 (14-137)||(18923608-18923731)
chr4 (14-137)||(27764597-27764720)
chr4 (70-137)||(45256292-45256359)
chr4 (55-137)||(38485313-38485395)
chr4 (71-106)||(51836798-51836833)
[»] scaffold0194 (1 HSPs)
scaffold0194 (14-137)||(27953-28076)
[»] chr7 (4 HSPs)
chr7 (14-137)||(46024379-46024502)
chr7 (70-137)||(46573177-46573244)
chr7 (14-82)||(30430117-30430185)
chr7 (84-137)||(30429222-30429275)
[»] chr5 (5 HSPs)
chr5 (14-137)||(13363129-13363252)
chr5 (14-128)||(25016831-25016945)
chr5 (14-137)||(23335294-23335417)
chr5 (14-97)||(42512389-42512472)
chr5 (70-137)||(28069858-28069922)
[»] chr3 (5 HSPs)
chr3 (14-137)||(8718461-8718584)
chr3 (14-137)||(9070348-9070471)
chr3 (71-134)||(51362120-51362183)
chr3 (70-137)||(7044978-7045045)
chr3 (70-137)||(19385005-19385072)
[»] chr1 (4 HSPs)
chr1 (14-137)||(45889951-45890074)
chr1 (14-137)||(18057154-18057277)
chr1 (18-137)||(23319679-23319798)
chr1 (133-193)||(30743627-30743687)
[»] scaffold0097 (1 HSPs)
scaffold0097 (14-137)||(13960-14082)
[»] chr2 (2 HSPs)
chr2 (14-137)||(20710121-20710243)
chr2 (70-137)||(18297788-18297855)
[»] chr8 (4 HSPs)
chr8 (14-137)||(32987042-32987164)
chr8 (14-137)||(39022327-39022450)
chr8 (17-137)||(15260442-15260562)
chr8 (134-163)||(24926915-24926944)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 22180836 - 22180959
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22180836 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 22180935  T
Q  114 atccgagttcggatttggctttaa 137  Q
    ||||||||||||||||||||||||    
T  22180936 atccgagttcggatttggctttaa 22180959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 4168833 - 4168710
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  4168833 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactccttctcattgtgtttttgcgtg 4168734  T
Q  114 atccgagttcggatttggctttaa 137  Q
    ||||||||||||||||||||||||    
T  4168733 atccgagttcggatttggctttaa 4168710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 21097593 - 21097470
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| ||    
T  21097593 gaagaagaggagcgaaccggctcaacagtaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatatactccttcttgttgtgtttttgctcg 21097494  T
Q  114 atccgagttcggatttggctttaa 137  Q
    || | |||||||||||||||||||    
T  21097493 attcaagttcggatttggctttaa 21097470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 18923731 - 18923608
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    ||||||||||||||||||| || |||| ||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18923731 gaagaagaggagcgaaccgacttaacatcaagtgaagtaaagaaaatttcgtttgtgttttaatatttagatctactccttctcgttgtgtttttgcgcg 18923632  T
Q  114 atccgagttcggatttggctttaa 137  Q
    |||||| ||||||||||| |||||    
T  18923631 atccgacttcggatttggatttaa 18923608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 27764720 - 27764597
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||  ||||| |||||||||||||||    
T  27764720 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcgtctgtgttttaatctttaggtctactatttctcattgtgtttttgcgcg 27764621  T
Q  114 atccgagttcggatttggctttaa 137  Q
    |||| |||||  ||||||||||||    
T  27764620 atcccagttcaaatttggctttaa 27764597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 45256359 - 45256292
Alignment:
Q  70 gttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgagttcggatttggctttaa 137  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45256359 gttttaatctttagatctactccttctcgttgagtttttgcgcgatccgagttcggatttggctttaa 45256292  T

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Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 38485313 - 38485395
Alignment:
Q  55 gaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgagttcggatttggctttaa 137  Q
    ||||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||    
T  38485313 gaaaatttcgtttgtgttttaatctttaaatctactcattctcattgtgtttttgcgtgatccgagttcgaatttggctttaa 38485395  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 51836798 - 51836833
Alignment:
Q  71 ttttaatctttagatctactccttctcgttgtgttt 106  Q
    ||||||||||||||||||||||||||||||||||||    
T  51836798 ttttaatctttagatctactccttctcgttgtgttt 51836833  T

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Target: scaffold0194 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 28076 - 27953
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28076 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactccttctcgttgtgtttttgcgtg 27977  T
Q  114 atccgagttcggatttggctttaa 137  Q
    ||||||||| ||||||||||||||    
T  27976 atccgagtttggatttggctttaa 27953  T

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Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 46024502 - 46024379
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46024502 gaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 46024403  T
Q  114 atccgagttcggatttggctttaa 137  Q
    |||||| |||||||||||||||||    
T  46024402 atccgaattcggatttggctttaa 46024379  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 46573177 - 46573244
Alignment:
Q  70 gttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgagttcggatttggctttaa 137  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  46573177 gttttaatctttagatctactccttctcgttgtgcttttgcgcgatccgagtccggatttggctttaa 46573244  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 30430185 - 30430117
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatcttta 82  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  30430185 gaagaagaggagcgaaccgactcaacagcaagtgaagcaaagaaaatttcgtttatgttttaatcttta 30430117  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 30429275 - 30429222
Alignment:
Q  84 atctactccttctcgttgtgtttttgcgcgatccgagttcggatttggctttaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30429275 atctactccttctcgttgtgtttttgcgcgatccgagttcgaatttggctttaa 30429222  T

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Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 13363252 - 13363129
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13363252 gaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 13363153  T
Q  114 atccgagttcggatttggctttaa 137  Q
    |||||||||| |||||| ||||||    
T  13363152 atccgagttcagatttgactttaa 13363129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 25016831 - 25016945
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25016831 gaagaagaggagcgaaccggctcaacagctagtgaagcaaaaaaaatttcatttgtgttttaatctttagatctactcctcctcgttgtgtttttgcgcg 25016930  T
Q  114 atccgagttcggatt 128  Q
    |||||||||||||||    
T  25016931 atccgagttcggatt 25016945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 23335294 - 23335417
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  23335294 gaagaagaggagcgaaccggctcaacagcaagttaagcaaagaaaattttgtttgtgttttaatctttaaatctactcattctagttgtgtttttgcgcg 23335393  T
Q  114 atccgagttcggatttggctttaa 137  Q
    ||||||||||||||| ||||||||    
T  23335394 atccgagttcggattaggctttaa 23335417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 42512472 - 42512389
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctc 97  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  42512472 gaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgtttaaatttttagatctactccttctc 42512389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 28069858 - 28069922
Alignment:
Q  70 gttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgagttcggatttggctttaa 137  Q
    |||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||||    
T  28069858 gttttaatctttagatctactcctt---gttgtgtttttgcgggatccgagttcggatttggctttaa 28069922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 8718584 - 8718461
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8718584 gaagaacaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 8718485  T
Q  114 atccgagttcggatttggctttaa 137  Q
    ||||||||||| ||||||||||||    
T  8718484 atccgagttcgaatttggctttaa 8718461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 9070471 - 9070348
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9070471 gaagaacaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 9070372  T
Q  114 atccgagttcggatttggctttaa 137  Q
    ||||||||||| ||||||||||||    
T  9070371 atccgagttcgaatttggctttaa 9070348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 51362120 - 51362183
Alignment:
Q  71 ttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgagttcggatttggctt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51362120 ttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgagttcggatttggctt 51362183  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 7044978 - 7045045
Alignment:
Q  70 gttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgagttcggatttggctttaa 137  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  7044978 gttttaatctttagatctactccttctcgttgtgtttttgcgtgatccgagttcagatttggctttaa 7045045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 19385005 - 19385072
Alignment:
Q  70 gttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgagttcggatttggctttaa 137  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19385005 gttttaatatttagatctactcattctcgttgtgtttttgcgcgatccgagttcggatttggctttaa 19385072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 45890074 - 45889951
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45890074 gaagaagaggagtgaaccggctcaacagcaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcattctcgttgtgtttttgcgcg 45889975  T
Q  114 atccgagttcggatttggctttaa 137  Q
    ||| ||||||||||||||||||||    
T  45889974 atctgagttcggatttggctttaa 45889951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 18057277 - 18057154
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |     
T  18057277 gaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctactcattctcgttgtgtttttgcaca 18057178  T
Q  114 atccgagttcggatttggctttaa 137  Q
    ||||||||||| ||||| ||||||    
T  18057177 atccgagttcgaatttgactttaa 18057154  T

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Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 23319679 - 23319798
Alignment:
Q  18 aagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcgatcc 117  Q
    |||||||| |||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |||||    
T  23319679 aagaggagtgaaccggctcaacagcaagtgaagcaaaaaaaaattcgtttgtattttaatctttagatctactcattctcgttgtgtttttgcgtgatcc 23319778  T
Q  118 gagttcggatttggctttaa 137  Q
    ||||| ||||||||||||||    
T  23319779 gagtttggatttggctttaa 23319798  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 30743627 - 30743687
Alignment:
Q  133 tttaagacctaagaattatataaacaatggtgtataatcactaaaacaatttgggatatat 193  Q
    ||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||    
T  30743627 tttaagacctaaggattatataaataatggtgtttaatcactaaaacaatttgggatatat 30743687  T

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Target: scaffold0097 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 14082 - 13960
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14082 gaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctact-cttctcgttgtgtttttgcgcg 13984  T
Q  114 atccgagttcggatttggctttaa 137  Q
    ||||||||||| ||||||||||||    
T  13983 atccgagttcgaatttggctttaa 13960  T

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Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 20710243 - 20710121
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20710243 gaagaagaggagcgaaccggctcaacaacaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatctact-cttctcgttgtgtttttgcgcg 20710145  T
Q  114 atccgagttcggatttggctttaa 137  Q
    ||||||||||| ||||||||||||    
T  20710144 atccgagttcgaatttggctttaa 20710121  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 18297788 - 18297855
Alignment:
Q  70 gttttaatctttagatctactccttctcgttgtgtttttgcgcgatccgagttcggatttggctttaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  18297788 gttttaatctttagatctactccttctcgttgtgtttttgcgcgacccgagtttggatttggctttaa 18297855  T

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Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 32987042 - 32987164
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32987042 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcgtttgtgttttaatctttagatatactccttctcgttgtgtttttgcgcg 32987141  T
Q  114 atccgagttcggatttggctttaa 137  Q
    ||||  ||||||||||| ||||||    
T  32987142 atcc-tgttcggatttgactttaa 32987164  T

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Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 39022450 - 39022327
Alignment:
Q  14 gaagaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcg 113  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  39022450 gaagaagaggagcgaactgactcaacagcaagtgaagcaaagaaaattttgtttgtgttttaatctttagatctactctttctcgttgtgtttttgcgtg 39022351  T
Q  114 atccgagttcggatttggctttaa 137  Q
    ||||||||||||||||||||||||    
T  39022350 atccgagttcggatttggctttaa 39022327  T

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Target: chr8; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 15260442 - 15260562
Alignment:
Q  17 gaagaggagcgaaccggctcaacagcaagtgaagcaaagaaaatttcttttgtgttttaatctttagatctactccttctcgttgtgtttttgcgcgatc 116  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  15260442 gaagaggagcgaaccggctcaacaacaagtgaagcaatgaaaattttgtttgtgttttaatctttagatctactccttctcgttgtatttttgcacgatc 15260541  T
Q  117 cgagttcggatttggctttaa 137  Q
    |||||||||||||||||||||    
T  15260542 cgagttcggatttggctttaa 15260562  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 163
Target Start/End: Original strand, 24926915 - 24926944
Alignment:
Q  134 ttaagacctaagaattatataaacaatggt 163  Q
    ||||||||||||||||||||||||||||||    
T  24926915 ttaagacctaagaattatataaacaatggt 24926944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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