View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7722_low_26 (Length: 222)
Name: NF7722_low_26
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7722_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 26325034 - 26324830
Alignment:
| Q |
4 |
aatgagatggacatcattatatatatgtcaaagaggtgcaattgacggttaattaccgttggaaaattgcatgaagtcgtttcagtttgtttattttgaa |
103 |
Q |
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| T |
26325034 |
aatgagatggaaattattatatatatgtcaaagaggtgcaattgacggttaattaccgttggaaaattgcatgaagtcgtttcagtttgtttattttgaa |
26324935 |
T |
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| Q |
104 |
acgtggttattttttatttgggatttgcaaataaaaccaagaaacacgacttttcaaatttattatcagttgattaccgttagatactattgtggtcata |
203 |
Q |
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| T |
26324934 |
acgtggttattttttatttgggatttgcaaataaaaccaagaaacacgacttttcaaatttattatcagttgattaccgttagatactattgtggtcata |
26324835 |
T |
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| Q |
204 |
ttgtt |
208 |
Q |
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||||| |
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| T |
26324834 |
ttgtt |
26324830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 48320850 - 48320906
Alignment:
| Q |
33 |
aaagaggtgcaattgacggttaattaccgttggaaaattgcatgaagtcgtttcagtt |
90 |
Q |
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| T |
48320850 |
aaagaggtgcaattggcggttaattaccgtttgaaaa-tgcatgaagtcgtttcagtt |
48320906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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