View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7722_low_27 (Length: 219)
Name: NF7722_low_27
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7722_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 42896276 - 42896076
Alignment:
| Q |
1 |
taagctgtatatccgcatagatgcgatgtgaaaaagataaactcgatgcatggtgaaaaaacatatcatcaaacatgaaactgaaactacaatcctcaaa |
100 |
Q |
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| T |
42896276 |
taagctgtatatccgcatagatgcgatgtgaaaaagataaactcgatgcatggtgaaaaaacatatcatcaaacatgaaactgaaactacaatcctcaaa |
42896177 |
T |
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| Q |
101 |
caacaaaccatcctgctgacacagacactagacgatacatatacatcgatacggtgacaccgatgaaaaatggataaaatgatttaattgaatgtaatgt |
200 |
Q |
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| T |
42896176 |
caacaaaccatcctgctgacacagacactagacgatacatatacatcgatgcggtgacaccgatgaaaaatggataaaatgatttaattgaatgtaatgt |
42896077 |
T |
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| Q |
201 |
g |
201 |
Q |
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| T |
42896076 |
g |
42896076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28897798 - 28897738
Alignment:
| Q |
1 |
taagctgtatatccgcatagatgcgatgtgaaaaagat-aaactcgatgcatggtgaaaaa |
60 |
Q |
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|||||| |||||||||||||||| ||||||||||| | ||||| ||||||| |||||||| |
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| T |
28897798 |
taagctatatatccgcatagatgagatgtgaaaaacttaaaacttgatgcattgtgaaaaa |
28897738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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