View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7722_low_28 (Length: 209)
Name: NF7722_low_28
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7722_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 8412251 - 8412424
Alignment:
| Q |
20 |
tcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagtt |
119 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8412251 |
tcccaataaaggaagagggtatgctttatcaattgccaaaaccttttccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagtt |
8412350 |
T |
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| Q |
120 |
ttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggat |
193 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
8412351 |
ttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggat |
8412424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 8434349 - 8434522
Alignment:
| Q |
20 |
tcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagtt |
119 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8434349 |
tcccaataaaggaagagggtatgctttatcaattgccaaaaccttttccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagtt |
8434448 |
T |
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| Q |
120 |
ttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggat |
193 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
8434449 |
ttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggat |
8434522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 8375755 - 8375582
Alignment:
| Q |
20 |
tcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagtt |
119 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8375755 |
tcccaataaaggaagagggtatgctttatcaattgccaaaaccttttccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagtt |
8375656 |
T |
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| Q |
120 |
ttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggat |
193 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| | | |||||| |||||||| |
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| T |
8375655 |
ttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgttcctcggccaattgagaaggttggat |
8375582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 8439348 - 8439521
Alignment:
| Q |
20 |
tcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagtt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
8439348 |
tcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttccattgcatctttgacatcttcctcggtaggatttcctatagcaattttagtt |
8439447 |
T |
|
| Q |
120 |
ttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggat |
193 |
Q |
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| ||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| | | |||||| |||||||| |
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| T |
8439448 |
tggatttgactttgaagttgcttgaacaatcttgtagcatttctttgttcctcggccaattgagaaggttggat |
8439521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 8395437 - 8395268
Alignment:
| Q |
24 |
aataaaggaagagggtatgctttatcaagtgccaaaaccttttccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttga |
123 |
Q |
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||||| ||||| || |||||||| ||||| |||||||| |||||||||||| | || ||||||||||| |||||||||||| ||| |||||||||| | |
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| T |
8395437 |
aataatggaagtggatatgctttgtcaagggccaaaactttttccattgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaa |
8395338 |
T |
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| Q |
124 |
tatgactttgaagttgcttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggat |
193 |
Q |
| |
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||| ||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
8395337 |
tattgctttgaagttgtttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggat |
8395268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 8406135 - 8406304
Alignment:
| Q |
24 |
aataaaggaagagggtatgctttatcaagtgccaaaaccttttccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttga |
123 |
Q |
| |
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||||| ||||| || |||||||| ||||| |||||||| |||||||||||| | || ||||||||||| |||||||||||| ||| |||||||||| | |
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| T |
8406135 |
aataatggaagtggatatgctttgtcaagggccaaaactttttccattgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaa |
8406234 |
T |
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| Q |
124 |
tatgactttgaagttgcttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggat |
193 |
Q |
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||| ||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
8406235 |
tattgctttgaagttgtttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggat |
8406304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 8417466 - 8417600
Alignment:
| Q |
20 |
tcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagtt |
119 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||||| ||||| || || |||||||||||||| | |||| |||||||| ||||||| | ||| |
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| T |
8417466 |
tcccaataaaggaagtgggtgtgctttatcatgtgccaaaactttttcaatagcttctttgacatcttctttagtagaatttccaagagcaatttttgtt |
8417565 |
T |
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| Q |
120 |
ttgatatgactttgaagttgcttgaacaaccttgt |
154 |
Q |
| |
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| ||| ||||||||||||||||||||||| ||||| |
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| T |
8417566 |
tggatttgactttgaagttgcttgaacaatcttgt |
8417600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 8431353 - 8431452
Alignment:
| Q |
94 |
taggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggat |
193 |
Q |
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|||||||||||| |||||||||||||| || || |||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
8431353 |
taggatttccaagagcaattgtagtttgaatttgcctttgaagttacttgaacaatcttgtggcattcctttgttcttctgtgagttgagagggttggat |
8431452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 41119234 - 41119284
Alignment:
| Q |
141 |
ttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttgg |
191 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41119234 |
ttgaacattcttgtagcattcctttgttcctctgtgagttgagagggttgg |
41119284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 8404188 - 8404240
Alignment:
| Q |
24 |
aataaaggaagagggtatgctttatcaagtgccaaaaccttttccattgcatc |
76 |
Q |
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||||||||||| || || ||||||||||| ||||||||||| || |||||||| |
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| T |
8404188 |
aataaaggaagtggataggctttatcaagagccaaaaccttctcaattgcatc |
8404240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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