View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7722_low_4 (Length: 449)
Name: NF7722_low_4
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7722_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 433
Target Start/End: Complemental strand, 33030547 - 33030120
Alignment:
| Q |
21 |
ctgctaaacacgctcaaaatcgggccacgatttagacaaatcgaaccctggttttacactc------aactttaatttttgagtcaattttcaacattag |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||| | |||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
33030547 |
ctgctaaacacgctcaaaatcgggccacgatttagacaaattggaccccgattttacactcctttagaacttcaatttttgagtcaattttcaacattag |
33030448 |
T |
|
| Q |
115 |
aaagtagtaatcaatggataaagttgtcttaagcaa-----ttatcgatgataaatagactatgcttggagataaacatttgagagatagatggttaagt |
209 |
Q |
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|||||||||| |||||||||||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33030447 |
gaagtagtaattaatggataaagtagccttaagcaacaacattatctatgataaatagactatgcttggagataaacatttgagagatagatagttaagt |
33030348 |
T |
|
| Q |
210 |
ttaaactaagagatatattttaggatgatatgtttgaatgattacttgtgtttgacatccccattgttatacttgtacgtaaatattagccctatatctt |
309 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33030347 |
ttaatctaagagatatatttggggatgatatgtttgaatgattacttgtgtttgacatccccattgttatacttgtacgtaaatattagccttatatctt |
33030248 |
T |
|
| Q |
310 |
gtaatgtgtttctatctatatatttagattccattgaagaggagtttaaaggtaaagatggt----gcgtttctttgcactccttatgaagctggcgatg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33030247 |
gtaatgtgtttctatctatatatttagattccattgaagaggagtttaaaggtaaagatggtgcgtgcgtttctttgcactccttatgaagctggcgatg |
33030148 |
T |
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| Q |
406 |
taaacgctagtgtcgttgacaagaattc |
433 |
Q |
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||||||||||||||| |||||||||||| |
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| T |
33030147 |
taaacgctagtgtcgctgacaagaattc |
33030120 |
T |
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