View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7722_low_5 (Length: 439)

Name: NF7722_low_5
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7722_low_5
NF7722_low_5
[»] chr3 (19 HSPs)
chr3 (14-424)||(679208-679620)
chr3 (148-424)||(751015-751290)
chr3 (14-150)||(747402-747538)
chr3 (14-141)||(2501817-2501944)
chr3 (27-143)||(7324687-7324803)
chr3 (25-143)||(2491753-2491871)
chr3 (25-146)||(9594898-9595019)
chr3 (25-143)||(9566094-9566212)
chr3 (150-424)||(2632504-2632762)
chr3 (22-131)||(2644633-2644742)
chr3 (14-131)||(2659420-2659537)
chr3 (25-134)||(7443269-7443378)
chr3 (25-143)||(2474776-2474895)
chr3 (36-143)||(9562235-9562342)
chr3 (349-424)||(9564834-9564909)
chr3 (25-135)||(754888-754998)
chr3 (25-123)||(7334560-7334658)
chr3 (25-150)||(2631013-2631138)
chr3 (25-143)||(2476308-2476426)


Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 14 - 424
Target Start/End: Complemental strand, 679620 - 679208
Alignment:
Q  14 atggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679620 atggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat 679521  T
Q  114 gattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679520 gattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattc 679421  T
Q  214 tttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679420 tttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaa 679321  T
Q  314 atatagttatatgcctcattttca--nnnnnnnnnctttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaag 411  Q
    || |||||||||||||||||||||           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679320 atgtagttatatgcctcattttcatttttttttttctttctagttctgagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaag 679221  T
Q  412 gtgaggttgttaa 424  Q
    |||||||||||||    
T  679220 gtgaggttgttaa 679208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 148 - 424
Target Start/End: Complemental strand, 751290 - 751015
Alignment:
Q  148 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  751290 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 751191  T
Q  248 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnc 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||              
T  751190 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt- 751092  T
Q  348 tttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaa 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  751091 tttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaa 751015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 747538 - 747402
Alignment:
Q  14 atggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |    
T  747538 atggacatcactaagctttggatatgatcatttcattgataattataaggtcgttgttgtttcttcagaaaaagaggttttttttaatactttgggggct 747439  T
Q  114 gattattggacaagaatagagggcatcccacattatt 150  Q
    |||||||||| ||||||||||||||||||||||||||    
T  747438 gattattggaaaagaatagagggcatcccacattatt 747402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 2501817 - 2501944
Alignment:
Q  14 atggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||  |||||||||||   ||||| || ||| | |||||||||||||||  |    
T  2501817 atggacatcactaagctttggatatgatcatttcattgataattataaggtcattgttgtttctgacgaaaatgaagttagggttaatactttggggact 2501916  T
Q  114 gattattggacaagaatagagggcatcc 141  Q
    |||||||||| ||  ||||||| |||||    
T  2501917 gattattggagaaagatagaggacatcc 2501944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 7324803 - 7324687
Alignment:
Q  27 agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaa 126  Q
    |||||||| || |||||||| ||||||||  |||||||  |||||||||||||  ||||  | ||| |||||||||||||||||  ||||||||||||||    
T  7324803 agctttgggtacgatcatttaattgataactataaggtcattgttgtttcttccaaaaataaagttagtgttaatactttggggactgattattggacaa 7324704  T
Q  127 gaatagagggcatccca 143  Q
    ||||||||| |||||||    
T  7324703 gaatagaggacatccca 7324687  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 2491753 - 2491871
Alignment:
Q  25 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 124  Q
    |||||||||| |||||||||||||||||| |  |||||||  ||| ||||||||| ||||| || ||| ||||| |||||||||||  ||||||||||||    
T  2491753 taagctttgggtatgatcatttcattgatgattataaggtcattggtgtttcttccgaaaatgaagttagtgtttatactttggggactgattattggac 2491852  T
Q  125 aagaatagagggcatccca 143  Q
    ||||||  ||| |||||||    
T  2491853 aagaatcaaggacatccca 2491871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 9595019 - 9594898
Alignment:
Q  25 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 124  Q
    ||||||| || ||||||||||||||||||||  |||||||  ||| | || ||||  |||| || |||| |||| |||||||||||  ||||||||||||    
T  9595019 taagcttcgggtatgatcatttcattgataagtataaggtcattgattttgcttccaaaaatgatgtttttgtttatactttggggactgattattggac 9594920  T
Q  125 aagaatagagggcatcccacat 146  Q
    ||||||||||| ||||||||||    
T  9594919 aagaatagaggacatcccacat 9594898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 9566212 - 9566094
Alignment:
Q  25 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 124  Q
    |||| ||||| ||||||||||||||||||||  ||||| |  ||  ||||||| || |||| || ||| ||||| |||||||||||  ||||||||||||    
T  9566212 taagttttgggtatgatcatttcattgataattataagctcatttctgtttctacaaaaaatgaagttagtgtttatactttggggactgattattggac 9566113  T
Q  125 aagaatagagggcatccca 143  Q
    ||||||||||| |||||||    
T  9566112 aagaatagaggacatccca 9566094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 424
Target Start/End: Original strand, 2632504 - 2632762
Alignment:
Q  150 ttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagat----tctttcaacacttgctcttttgattatcatagta 245  Q
    |||||||||||||||||||||||| |||||||||| || |    |||||||||||||||| |    ||||||| |||| | |||||  |||||||||||     
T  2632504 ttcaattctccaaaccctgcagttttaaaatcagcacatt----gttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatagt- 2632598  T
Q  246 tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnn 345  Q
     |||| ||||||||||||| | || |||||| |   ||||||||| | ||||||||||||||||| || |  | || |||||||| ||||||            
T  2632599 -catacacttcacatgtgtgtgaataattcata---tttagctttttgaaacttatagtgagttttaa-tgcaattctatgcctcgttttcatt------ 2632687  T
Q  346 nctttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaa 424  Q
      ||||| ||| | |||||||||||||||||||  ||||||||||||||||| ||| |   ||||||||||||||||||    
T  2632688 --tttcttgttttgagaattagaagaatgctgc--atatttgagtattttccaagataatgaaaaggtgaggttgttaa 2632762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 2644742 - 2644633
Alignment:
Q  22 cactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattg 121  Q
    |||||||||||||||||||||| ||| |||||||  |||||||  || ||||||||   ||||| || ||| | |||||||||||||||  |||||||||    
T  2644742 cactaagctttggatatgatcacttcgttgataattataaggtcattattgtttctgacgaaaatgaagttagggttaatactttggggactgattattg 2644643  T
Q  122 gacaagaata 131  Q
    ||||||||||    
T  2644642 gacaagaata 2644633  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 2659537 - 2659420
Alignment:
Q  14 atggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat 113  Q
    |||| ||| |||||||||||||||||||||||| ||||||||  ||||||||||||    |||||   |||||| | || |||||||||||||||||  |    
T  2659537 atggtcattactaagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgattagtgttaatactttggggact 2659438  T
Q  114 gattattggacaagaata 131  Q
    |||||||||| |||||||    
T  2659437 gattattggagaagaata 2659420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 7443378 - 7443269
Alignment:
Q  25 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 124  Q
    |||| ||||| ||||||||||||||||||||  |||| ||||||| | |||||||  || | ||||||| ||||||| ||||||||  |||||||||||     
T  7443378 taagttttgggtatgatcatttcattgataattataaagttgttgctatttcttccaaatatgaggtttttgttaatgctttggggactgattattggag 7443279  T
Q  125 aagaatagag 134  Q
    ||||||||||    
T  7443278 aagaatagag 7443269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 2474776 - 2474895
Alignment:
Q  25 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttggggga-tgattattgga 123  Q
    |||||||||||||||||||||||||||||||  | ||||   ||||  |||||||  |||| || ||| |||||||||||||   ||| |||||||||||    
T  2474776 taagctttggatatgatcatttcattgataattacaaggccattgtattttcttccaaaaatgaagttagtgttaatacttttaaggactgattattgga 2474875  T
Q  124 caagaatagagggcatccca 143  Q
    |||||||||||| |||||||    
T  2474876 caagaatagaggacatccca 2474895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 9562342 - 9562235
Alignment:
Q  36 tatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagg 135  Q
    ||||||||||||||||||||  |||||||  ||||||||||| |  |||| || ||| ||||| |||||||||||  |||||||||||  ||||||||||    
T  9562342 tatgatcatttcattgataattataaggtcattgttgtttctaccaaaaatgaagttagtgtttatactttggggactgattattggaagagaatagagg 9562243  T
Q  136 gcatccca 143  Q
     |||||||    
T  9562242 acatccca 9562235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 9564909 - 9564834
Alignment:
Q  349 ttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaa 424  Q
    |||| ||||| ||||||||||||||||||  | |||||||||||||||| ||||||  ||||||||||||||||||    
T  9564909 ttctggttctgagaattagaagaatgctgtatgtatttgagtattttccaagacagtgaaaaggtgaggttgttaa 9564834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 754998 - 754888
Alignment:
Q  25 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 124  Q
    |||||||||| ||||||||||||||| ||||  | |||||  ||  ||||||| || |||| || ||||||||| |||| ||||||  ||||||||||||    
T  754998 taagctttgggtatgatcatttcattcataattacaaggtcatttctgtttctacaaaaaatgaagtttgtgtttatacattggggactgattattggac 754899  T
Q  125 aagaatagagg 135  Q
    |||||||||||    
T  754898 aagaatagagg 754888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 7334658 - 7334560
Alignment:
Q  25 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattgga 123  Q
    ||||||| |||||||||||||||||||||||  ||||||| |||| |||||||  | ||||| | ||| ||||| ||||||||||   |||||||||||    
T  7334658 taagcttcggatatgatcatttcattgataattataaggtcgttgctgtttctgtaaaaaaaaaagttagtgtttatactttgggaactgattattgga 7334560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 2631013 - 2631138
Alignment:
Q  25 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 124  Q
    |||||||||| ||||||  ||||||||||||  |||||||  ||| |||||||||  |||| || |||| | || ||||||| |||  |||||||||||     
T  2631013 taagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttctttatactttagggactgattattggaa 2631112  T
Q  125 aagaatagagggcatcccacattatt 150  Q
    ||||||||| | ||||||| ||||||    
T  2631113 aagaatagacgacatcccatattatt 2631138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 2476308 - 2476426
Alignment:
Q  25 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 124  Q
    |||||||||| ||||||||||  ||||||||  | |||||  || ||||||||    |||| || ||| |||||||||||||||||  ||||||||||||    
T  2476308 taagctttgggtatgatcattctattgataactacaaggtcattcttgtttctgacaaaaacgaagttagtgttaatactttggggactgattattggac 2476407  T
Q  125 aagaatagagggcatccca 143  Q
    ||||||  ||| |||||||    
T  2476408 aagaatgcaggacatccca 2476426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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