View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7722_low_6 (Length: 399)
Name: NF7722_low_6
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7722_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 34415727 - 34416106
Alignment:
| Q |
1 |
tacggagctggatggtcatattatgcgatgcgtgcgtgatcagaatggaaaccatgtcatccagaagtgtattgaatgtgtacctgaggatgaaatcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34415727 |
tacggagctggatggtcatattatgcgatgcgtgcgtgatcagaatggaaaccatgtcatccagaagtgtattgaatgtgtacctgaggatgaaatcaag |
34415826 |
T |
|
| Q |
101 |
tttatcgtttcaacgttttatgaccaagttgtgacgttgtcaactcatccatatggttgccgtgttatacaggtgacaaattcatccttttgattttatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34415827 |
tttatcgtttcaacgttttatgaccaagttgtgacgttgtcaactcatccatatggttgccgtgttatacaggtgacaaattcatccttttgattttatt |
34415926 |
T |
|
| Q |
201 |
tgtgtgaacacatttactgaattgaaaataactggccagagactatgattctaaattagttaagttttgataagcagagagtcttggagtactgccatga |
300 |
Q |
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| T |
34415927 |
tgtgtgaacacatttactgaattgaaaataactggccagagactatgattctaaattagttgagttttgataagcagagagtcttggagtactgccatga |
34416026 |
T |
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| Q |
301 |
tcctaaaactcaacagattatgatggatgagattttgcagtgtgtttccatgctagctcaagatcaatatgggaactatg |
380 |
Q |
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| T |
34416027 |
tcctaaaactcaacagattatgatggatgagattttgcagtgtgtttccatgctagctcaagatcaatatgggaactatg |
34416106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 155748 - 155459
Alignment:
| Q |
1 |
tacggagctggatggtcatattatgcgatgcgtgcgtgatcagaatggaaaccatgtcatccagaagtgtattgaatgtgtacctgaggatgaaatcaag |
100 |
Q |
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| T |
155748 |
tacggagcttgatggtcatattatgcgatgcgcgtgtgatcagaatggaaaccatgtcatccagaagtgtattgaatgtgtacctgaggatgaaatcagg |
155649 |
T |
|
| Q |
101 |
tttatcgtttcaacgttttatgaccaagttgtgacgttgtcaactcatccatatggttgccgtgttatacaggtgacaaattcatccttttgattttatt |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | || |||||||||||||||||| || ||||||||| |||||||| |
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| T |
155648 |
tttatcgtttcaacgttttataaccaagttgtgacgttgtcagctcatccatatagctgtcgtgttatacaggtgacatatccatcctttttattttatt |
155549 |
T |
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| Q |
201 |
tgtgtgaacacatttactgaattgaaaataactggccagagactatgattctaaattagttaagttttgataagcagagagtcttggagt |
290 |
Q |
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| T |
155548 |
tgtgtgaacacatttactgaattgataataactggcaagaaactatgattctaaactagttaagttttgataagcagagagtcttggagt |
155459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 24138903 - 24139072
Alignment:
| Q |
5 |
gagctggatggtcatattatgcgatgcgtgcgtgatcagaatggaaaccatgtcatccagaagtgtattgaatgtgtacctgaggatgaaatcaagttta |
104 |
Q |
| |
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||||| |||||| |||| ||||| || || |||||||||||||| || |||||||| ||||| |||||||||||||| ||||| || | ||| | |||| |
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| T |
24138903 |
gagcttgatggtaatatcatgcgctgtgttcgtgatcagaatggtaatcatgtcattcagaaatgtattgaatgtgtccctgaagaggcgatcgacttta |
24139002 |
T |
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| Q |
105 |
tcgtttcaacgttttatgaccaagttgtgacgttgtcaactcatccatatggttgccgtgttatacaggt |
174 |
Q |
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| T |
24139003 |
ttgtttcaacatttttcgatcaagttgtgacactctcaacccatccatacggttgtcgtgtgatacaggt |
24139072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 41721230 - 41721399
Alignment:
| Q |
5 |
gagctggatggtcatattatgcgatgcgtgcgtgatcagaatggaaaccatgtcatccagaagtgtattgaatgtgtacctgaggatgaaatcaagttta |
104 |
Q |
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||||| |||||| |||| ||||| || || || ||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||| ||| | |||| |
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| T |
41721230 |
gagcttgatggtaatatcatgcgctgtgtacgagatcagaatggtaaccatgtcattcagaagtgtattgaatgcgtacctgaagatgcaattgatttta |
41721329 |
T |
|
| Q |
105 |
tcgtttcaacgttttatgaccaagttgtgacgttgtcaactcatccatatggttgccgtgttatacaggt |
174 |
Q |
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| T |
41721330 |
ttatctcaactttttttgatcaagttgtgacactatctacccatccatatggttgccgggtgatacaggt |
41721399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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