View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7722_low_7 (Length: 390)

Name: NF7722_low_7
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7722_low_7
NF7722_low_7
[»] chr1 (3 HSPs)
chr1 (14-376)||(11400421-11400793)
chr1 (63-216)||(31178386-31178530)
chr1 (233-293)||(3609514-3609574)
[»] chr6 (5 HSPs)
chr6 (63-223)||(794971-795134)
chr6 (63-223)||(799726-799889)
chr6 (63-223)||(8274654-8274817)
chr6 (63-223)||(8269939-8270101)
chr6 (234-276)||(1475275-1475317)
[»] chr5 (4 HSPs)
chr5 (63-223)||(19940883-19941046)
chr5 (63-223)||(19945637-19945800)
chr5 (63-119)||(42839289-42839345)
chr5 (233-293)||(18091073-18091133)
[»] chr7 (4 HSPs)
chr7 (63-223)||(6693687-6693850)
chr7 (63-223)||(6688947-6689100)
chr7 (64-155)||(27222103-27222194)
chr7 (63-113)||(33756592-33756642)
[»] chr8 (4 HSPs)
chr8 (20-205)||(26199673-26199858)
chr8 (95-183)||(6065853-6065941)
chr8 (233-280)||(44358148-44358195)
chr8 (241-293)||(8794152-8794204)
[»] chr4 (1 HSPs)
chr4 (63-134)||(11891521-11891591)
[»] chr3 (1 HSPs)
chr3 (244-288)||(32930731-32930775)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 11400421 - 11400793
Alignment:
Q  14 acacgcaaattgttaacgaagttcggtcaattatg---------cagactactaaagttctctttaataaaaaggggaatatatgtgtttacaaacactc 104  Q
    |||| ||||||||||||||||||||||||||||||         ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11400421 acacacaaattgttaacgaagttcggtcaattatgtctactatgcaggctactaaagtcctctttaataaaaaggggaatatatgtgtttacaaacactc 11400520  T
Q  105 aaaatctctcactatccacaatccaattacacccaagaactgtctctaaaattctctaacttaatttttctctaactctgttgatgtaattcactctctt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11400521 aaaatctctcactatccacaatccaattacacccaagaactgtctctaaaattctctaacttaatttttctctaactctgttgatgtaattcactctctt 11400620  T
Q  205 gacttgtgttgtgtttttgatttgatggaaaaagtgaatgttgaacattttataagtgagatgacatataaacttaatatcttaagg--ttgagttaaag 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||    
T  11400621 gacttgtgttgtgtttttgatttgatggaaaaagtgaatgttgaacattttataagtgagatgacatataaacttaatgtcttaaggttttgagttaaag 11400720  T
Q  303 tgcggcatctctctcactttatatgattgttcaaggtccggtcctcatgagtcatgacccaactcttccttatg 376  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11400721 tgcggcatctctctcac-ttatatgattgttcaaggtccggtcctcatgagtcatgacccaactcttccttatg 11400793  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 63 - 216
Target Start/End: Original strand, 31178386 - 31178530
Alignment:
Q  63 tctctttaataaaaaggggaatatatgtgtttacaaacactcaaaatctctcactatccacaatccaattacacccaagaactgtctctaaaattctcta 162  Q
    |||||||||||||||||| |||||||||  ||| ||||||||| || |||||||       |||||||||||||| ||||| | |||||||||||| ||     
T  31178386 tctctttaataaaaagggaaatatatgt--ttagaaacactcacaaactctcac-------aatccaattacacctaagaattttctctaaaattccctc 31178476  T
Q  163 acttaatttttctctaactctgttgatgtaattcactctcttgacttgtgttgt 216  Q
    ||| | ||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  31178477 actgagtttttctctaactctattgatgtaattcactcactttacttgtgttgt 31178530  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 3609514 - 3609574
Alignment:
Q  233 aaaaagtgaatgttgaacattttataagtgagatgacatataaacttaatatcttaaggtt 293  Q
    |||||||||||| |||||  |||||||||||||| || |||||||||||| | ||||||||    
T  3609514 aaaaagtgaatggtgaaccctttataagtgagataacctataaacttaatgtgttaaggtt 3609574  T

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Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 794971 - 795134
Alignment:
Q  63 tctctttaataaaaaggggaatatatgtgtttacaaacactcaaaatctctcactatccacaatccaattacacccaagaactgtctctaaaattctcta 162  Q
    |||||||||||||||||| |||||||||||||||||||||||| || ||||||||| |||||| ||||||||||||||||| | ||||||||||||||      
T  794971 tctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattacacccaagaattttctctaaaattctcac 795070  T
Q  163 acttaatttttctctaa--ctctgttgatgtaattcactctcttgacttg-tgttgtgtttttg 223  Q
    ||| | ||||||||| |  |||| |||||||||||||||| ||||  ||| |||||||||||||    
T  795071 actgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttg 795134  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 799726 - 799889
Alignment:
Q  63 tctctttaataaaaaggggaatatatgtgtttacaaacactcaaaatctctcactatccacaatccaattacacccaagaactgtctctaaaattctcta 162  Q
    |||||||||||||||||| |||||||||||||||||||||||| || |||| |||| |||||| ||||||||||||||||| | ||||||||||||||      
T  799726 tctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctaactacccacaacccaattacacccaagaattttctctaaaattctcac 799825  T
Q  163 acttaatttttctctaa--ctctgttgatgtaattcactctcttgacttg-tgttgtgtttttg 223  Q
    ||| | ||||||||| |  |||| |||||||||||||||| ||||  ||| |||||||||||||    
T  799826 actgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttg 799889  T

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Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 8274817 - 8274654
Alignment:
Q  63 tctctttaataaaaaggggaatatatgtgtttacaaacactcaaaatctctcactatccacaatccaattacacccaagaactgtctctaaaattctcta 162  Q
    |||||||||||||||||| |||||||||||||||||||||||| || || |||||| |||||| ||||||||||||||||| | ||||||||||||||      
T  8274817 tctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactttcactacccacaacccaattacacccaagaattttctctaaaattctcac 8274718  T
Q  163 acttaatttttctctaa--ctctgttgatgtaattcactctcttgacttg-tgttgtgtttttg 223  Q
    ||| | ||||||||| |  |||| |||||||||||||||| ||||  ||| |||||||||||||    
T  8274717 actgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttg 8274654  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 8270101 - 8269939
Alignment:
Q  63 tctctttaataaaaaggggaatatatgtgtttacaaacactcaaaatctctcactatccacaatccaattacacccaagaactgtctctaaaattctcta 162  Q
    |||||||||||||| ||| |||||||||||||||||||||||| || ||||||||| |||||| ||||||||||||||||| | ||||||||||||||      
T  8270101 tctctttaataaaa-gggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattacacccaagaattttctctaaaattctcac 8270003  T
Q  163 acttaatttttctctaa--ctctgttgatgtaattcactctcttgacttg-tgttgtgtttttg 223  Q
    ||| | ||||||||| |  |||| |||||||||||||||| ||||  ||| |||||||||||||    
T  8270002 actgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttg 8269939  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 1475317 - 1475275
Alignment:
Q  234 aaaagtgaatgttgaacattttataagtgagatgacatataaa 276  Q
    |||||||||||||||||||||||||||||| | ||| ||||||    
T  1475317 aaaagtgaatgttgaacattttataagtgaaaggacctataaa 1475275  T

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Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 19941046 - 19940883
Alignment:
Q  63 tctctttaataaaaaggggaatatatgtgtttacaaacactcaaaatctctcactatccacaatccaattacacccaagaactgtctctaaaattctcta 162  Q
    |||||||||||||||||| |||||||||||||||||||||||| || ||||||||| |||||| ||||||||||||||||| | ||||||||||||||      
T  19941046 tctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattacacccaagaattttctctaaaattctcac 19940947  T
Q  163 acttaatttttctctaa--ctctgttgatgtaattcactctcttgacttg-tgttgtgtttttg 223  Q
    ||| | ||||||||| |  |||| |||||||||||||||| ||||  ||| |||||||||||||    
T  19940946 actgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttg 19940883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 19945800 - 19945637
Alignment:
Q  63 tctctttaataaaaaggggaatatatgtgtttacaaacactcaaaatctctcactatccacaatccaattacacccaagaactgtctctaaaattctcta 162  Q
    |||||||||||||||||| |||||||||||||||||||||||| || ||||||||| |||||| ||||||||||||||||| | ||||||||||||||      
T  19945800 tctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattacacccaagaattttctctaaaattctcac 19945701  T
Q  163 acttaatttttctctaa--ctctgttgatgtaattcactctcttgacttg-tgttgtgtttttg 223  Q
    ||| | ||||||||| |  |||| |||||||||||||||| ||||  ||| |||||||||||||    
T  19945700 actgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttg 19945637  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 42839345 - 42839289
Alignment:
Q  63 tctctttaataaaaaggggaatatatgtgtttacaaacactcaaaatctctcactat 119  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||    
T  42839345 tctctttaataaaaagggaaatatacgtgtttacaaacactcacaatctctcactat 42839289  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 18091073 - 18091133
Alignment:
Q  233 aaaaagtgaatgttgaacattttataagtgagatgacatataaacttaatatcttaaggtt 293  Q
    ||||| ||||||||||| |||||||| |||||||||| ||||||| |||||||||||||||    
T  18091073 aaaaaatgaatgttgaatattttatatgtgagatgacctataaacctaatatcttaaggtt 18091133  T

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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 6693850 - 6693687
Alignment:
Q  63 tctctttaataaaaaggggaatatatgtgtttacaaacactcaaaatctctcactatccacaatccaattacacccaagaactgtctctaaaattctcta 162  Q
    |||||||||||||||||| |||||||||||||||||||||||| || ||||||||| |||||| ||||||||||||||||| | ||||||||||||||      
T  6693850 tctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattacacccaagaattttctctaaaattctcac 6693751  T
Q  163 acttaatttttctctaa--ctctgttgatgtaattcactctcttgacttg-tgttgtgtttttg 223  Q
    ||| | |||||| || |  |||| |||||||||||||||| ||||  ||| |||||||||||||    
T  6693750 actgagtttttcccttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttg 6693687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 6689100 - 6688947
Alignment:
Q  63 tctctttaataaaaaggggaatatatgtgtttacaaacactcaaaatctctcactatccacaatccaattacacccaagaactgtctctaaaattctcta 162  Q
    |||||||||||||||||| ||||||||| |||||||||          |||||||| |||||| ||||||||||||||||| | ||||||||||||||      
T  6689100 tctctttaataaaaagggaaatatatgtttttacaaac----------tctcactacccacaacccaattacacccaagaattttctctaaaattctcac 6689011  T
Q  163 acttaatttttctctaa--ctctgttgatgtaattcactctcttgacttg-tgttgtgtttttg 223  Q
    ||| | ||||||||| |  |||| |||||||||||||||| ||||  ||| |||||||||||||    
T  6689010 actgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttg 6688947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 27222194 - 27222103
Alignment:
Q  64 ctctttaataaaaaggggaatatatgtgtttacaaacactcaaaatctctcactatccacaatccaattacacccaagaactgtctctaaaa 155  Q
    ||||| ||| ||||||| |||||||||||||| ||||||||  ||||||| |||| ||||||  |||||||||||||||| | |||||||||    
T  27222194 ctcttcaattaaaagggaaatatatgtgtttataaacactcgcaatctcttactacccacaactcaattacacccaagaattttctctaaaa 27222103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 33756642 - 33756592
Alignment:
Q  63 tctctttaataaaaaggggaatatatgtgtttacaaacactcaaaatctct 113  Q
    |||||||||||||||||| |||||| |||||||||| |||||| |||||||    
T  33756642 tctctttaataaaaagggaaatatacgtgtttacaatcactcacaatctct 33756592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 26199858 - 26199673
Alignment:
Q  20 aaattgttaacgaagttcggtcaattatgcagactactaaagttctctttaataaaaaggggaatatatgtgtttacaaacactcaaaatctctcactat 119  Q
    |||||||||||||||||||| | | | | | |||| ||  || |||||||||||||||||| |||||  ||||||||||||||||| || |||||||||     
T  26199858 aaattgttaacgaagttcggcctactctccggactgctgcagatctctttaataaaaagggaaatat--gtgtttacaaacactcacaaactctcactac 26199761  T
Q  120 ccacaatccaattacacccaagaactgtctctaaaattctctaacttaatttttctctaa--ctctgttgatgtaattcactctcttg 205  Q
    |||||| ||||||||||||||||| | ||||||||||||||  ||| | ||||||||| |  |||| |||||||||||||||| ||||    
T  26199760 ccacaacccaattacacccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttg 26199673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 6065941 - 6065853
Alignment:
Q  95 acaaacactcaaaatctctcactatccacaatccaattacacccaagaactgtctctaaaattctctaacttaatttttctctaactct 183  Q
    ||||||||||| |||||||| ||| || ||| ||||||||| | ||||| | ||||||||||||||| | | | |||||||||||||||    
T  6065941 acaaacactcacaatctctcgctacccgcaacccaattacatcgaagaattttctctaaaattctctcaatgagtttttctctaactct 6065853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 44358195 - 44358148
Alignment:
Q  233 aaaaagtgaatgttgaacattttataagtgagatgacatataaactta 280  Q
    |||||||||||||||| ||||||||||||||||||||  |||||||||    
T  44358195 aaaaagtgaatgttgaccattttataagtgagatgactcataaactta 44358148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 8794152 - 8794204
Alignment:
Q  241 aatgttgaacattttataagtgagatgacatataaacttaatatcttaaggtt 293  Q
    |||||||||||| |||||||| ||| |||  |||||| |||||||||||||||    
T  8794152 aatgttgaacatcttataagtaagaggactcataaacctaatatcttaaggtt 8794204  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 11891521 - 11891591
Alignment:
Q  63 tctctttaataaaaaggggaatatatgtgtttacaaacactcaaaatctctcactatccacaatccaattac 134  Q
    |||||||||||||| ||| ||||||||| |||||||||||||| ||||||| |||| ||| || ||||||||    
T  11891521 tctctttaataaaatggg-aatatatgtatttacaaacactcacaatctcttactacccataacccaattac 11891591  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 32930731 - 32930775
Alignment:
Q  244 gttgaacattttataagtgagatgacatataaacttaatatctta 288  Q
    ||||||||||||||||||||||||||  ||||||| ||| |||||    
T  32930731 gttgaacattttataagtgagatgactcataaactcaatgtctta 32930775  T

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