View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7722_low_8 (Length: 358)
Name: NF7722_low_8
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7722_low_8 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 43052127 - 43051805
Alignment:
| Q |
1 |
tattcgagaaattgggatgatgtaacgttatgtggagtaagacaagaatatgtgaatgtatcctcatgtatttgagtgcgatcataactattgatgtttc |
100 |
Q |
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| T |
43052127 |
tattcgagaaattcggatgatgtaacgttatctggagtaagacaagaatatgtgaatgtatcctcatgtatttgagtgcgatcataactattgatgtttc |
43052028 |
T |
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| Q |
101 |
atagaatcaatcgtatatgaagttaattcatgattatttatttgttgacttgacttgtgttagttaaatttatactcatccatttactatgnnnnnnnat |
200 |
Q |
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| T |
43052027 |
atagaatcaatcgtatatgaagttaattcatgattatttatctgttgacttgacttgtgttagttaaatttatactcatccatttactatg-ttttttat |
43051929 |
T |
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| Q |
201 |
gacagattcatttttcatctatcaatggctccagcagcagcatcttcagactcctctatacagcctagaggtcattatcaaacttttgttgtgcttgcat |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43051928 |
gacagattcatttttcatctatcaatggctccggcagcagcatcttcagactcctctatacagcctagaggtcattatcaaacttttgttctgcttgcat |
43051829 |
T |
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| Q |
301 |
agcatttatctcattcattcaaac |
324 |
Q |
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| T |
43051828 |
accatttatctcattcattcaaac |
43051805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0449 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 38 - 343
Target Start/End: Original strand, 10104 - 10408
Alignment:
| Q |
38 |
taagacaagaatatgtgaatgtatcctcatgtatttgagtgcgatcataactattgatgtttcatagaatcaatcgtatatgaagttaattcatgattat |
137 |
Q |
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| T |
10104 |
taagacaagaatatgtgaatgtatcctcatgtatttgagtgcgatcataactattgatgtttcatagaatcaatcgtatatgaagttaattcatgattat |
10203 |
T |
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| Q |
138 |
ttatttgttgacttgacttgtgttagttaaatttatactcatccatttactatgnnnnnnnatgacagattcatttttcatctatcaatggctccagcag |
237 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
10204 |
ttatatgatgacttgacttgtgttagttaaatttatactcatccatttactatg-ttttttatgacagattcatttttcatctatcaatggctccggcag |
10302 |
T |
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| Q |
238 |
cagcatcttcagactcctctatacagcctagaggtcattatcaaacttttgttgtgcttgcatagcatttatctcattcattcaaacatttagttattcc |
337 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
10303 |
cagcatcttcagactcctctatacagcctagaggtcattatcaaacttttgttctgcttgcataccatttatctcattcattcaaacgtttagttattcc |
10402 |
T |
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| Q |
338 |
gtatat |
343 |
Q |
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|||||| |
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| T |
10403 |
gtatat |
10408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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