View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7722_low_9 (Length: 351)

Name: NF7722_low_9
Description: NF7722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7722_low_9
NF7722_low_9
[»] chr6 (35 HSPs)
chr6 (20-172)||(26656185-26656337)
chr6 (20-172)||(26762156-26762308)
chr6 (20-172)||(27337904-27338056)
chr6 (20-172)||(27398644-27398796)
chr6 (20-160)||(25579915-25580055)
chr6 (20-160)||(26056122-26056262)
chr6 (20-160)||(26076092-26076232)
chr6 (57-160)||(28786511-28786614)
chr6 (57-160)||(28792632-28792735)
chr6 (58-160)||(28781373-28781475)
chr6 (53-160)||(27214649-27214756)
chr6 (53-160)||(27234472-27234579)
chr6 (34-172)||(26646689-26646827)
chr6 (34-172)||(26752657-26752795)
chr6 (23-160)||(26143064-26143201)
chr6 (20-160)||(25538736-25538876)
chr6 (63-122)||(28234802-28234861)
chr6 (46-169)||(26824062-26824185)
chr6 (56-153)||(26802674-26802771)
chr6 (53-172)||(26861842-26861961)
chr6 (63-154)||(28185605-28185696)
chr6 (34-160)||(25481952-25482078)
chr6 (69-122)||(26617867-26617920)
chr6 (69-122)||(26723795-26723848)
chr6 (53-154)||(26949890-26949991)
chr6 (53-154)||(26959395-26959496)
chr6 (56-153)||(27718237-27718334)
chr6 (65-154)||(28297570-28297659)
chr6 (65-154)||(28514414-28514503)
chr6 (20-63)||(26049041-26049084)
chr6 (20-63)||(26070210-26070253)
chr6 (34-147)||(25506848-25506961)
chr6 (53-154)||(26635919-26636020)
chr6 (53-154)||(26741885-26741986)
chr6 (69-122)||(26811754-26811807)
[»] chr4 (5 HSPs)
chr4 (20-160)||(18655315-18655455)
chr4 (20-168)||(18731334-18731482)
chr4 (20-159)||(18699239-18699378)
chr4 (34-160)||(18723923-18724049)
chr4 (18-160)||(18679405-18679547)
[»] chr1 (3 HSPs)
chr1 (20-160)||(268195-268335)
chr1 (47-169)||(28164192-28164314)
chr1 (53-170)||(28127507-28127624)
[»] scaffold0277 (2 HSPs)
scaffold0277 (56-168)||(4514-4626)
scaffold0277 (58-168)||(13475-13585)
[»] chr8 (1 HSPs)
chr8 (20-168)||(29273613-29273761)
[»] scaffold0038 (1 HSPs)
scaffold0038 (63-122)||(34964-35023)
[»] scaffold0419 (1 HSPs)
scaffold0419 (58-168)||(7759-7869)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 26656185 - 26656337
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26656185 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 26656284  T
Q  120 tctgaccaaagctgccaacttgtctggctaccattgtagtcaagggtacccca 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26656285 tctgaccaaagctgccaacttgtctggctaccattgtagtcaagggtacccca 26656337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 26762156 - 26762308
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26762156 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 26762255  T
Q  120 tctgaccaaagctgccaacttgtctggctaccattgtagtcaagggtacccca 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26762256 tctgaccaaagctgccaacttgtctggctaccattgtagtcaagggtacccca 26762308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 27338056 - 27337904
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 119  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| || |||||||||||||    
T  27338056 gacatcagactgggagttatggtgagcatcttactaagcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggc 27337957  T
Q  120 tctgaccaaagctgccaacttgtctggctaccattgtagtcaagggtacccca 172  Q
    ||| ||| ||||||| ||||| || ||| |||||| |||||||||||||||||    
T  27337956 tcttacccaagctgctaacttctccggccaccattttagtcaagggtacccca 27337904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 27398796 - 27398644
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 119  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| || |||||||||||||    
T  27398796 gacatcagactgggagttatggtgagcatcttactaagcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggc 27398697  T
Q  120 tctgaccaaagctgccaacttgtctggctaccattgtagtcaagggtacccca 172  Q
    ||| ||| ||||||| ||||| || ||| |||||| |||||||||||||||||    
T  27398696 tcttacccaagctgctaacttctccggccaccattttagtcaagggtacccca 27398644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 25579915 - 25580055
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 119  Q
    ||||||||| ||| ||||| |||||| ||||||||||||||||| ||| ||| ||||||||| || |||||||| || | |||   ||||||||||| ||    
T  25579915 gacatcagagtgggagttatggtgagtatcttactaagcatgaagagaggtttcaaaataacgagaaaaacatggagcgattgcgtcaatggaagatagc 25580014  T
Q  120 tctgaccaaagctgccaacttgtctggctaccattgtagtc 160  Q
    ||| ||| ||||||| |||||||| ||||| |||| |||||    
T  25580015 tcttacccaagctgctaacttgtccggctatcattatagtc 25580055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 26056122 - 26056262
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 119  Q
    ||||||||| ||| ||||| ||||||||||||||||||||| || ||  ||||||||||||| || |||||||| || | |||   ||||||||||||||    
T  26056122 gacatcagagtgggagttatggtgagcatcttactaagcataaagaggggttccaaaataacgagaaaaacatggagcgattgcgtcaatggaagatggc 26056221  T
Q  120 tctgaccaaagctgccaacttgtctggctaccattgtagtc 160  Q
    ||| ||  ||||||| |||||||| ||||| |||| |||||    
T  26056222 tcttactcaagctgctaacttgtccggctatcattatagtc 26056262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 26076092 - 26076232
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 119  Q
    ||||||||| ||| ||||| ||||||||||||||||||||| || ||  ||||||||||||| || |||||||| || | |||   ||||||||||||||    
T  26076092 gacatcagagtgggagttatggtgagcatcttactaagcataaagaggggttccaaaataacgagaaaaacatggagcgattgcgtcaatggaagatggc 26076191  T
Q  120 tctgaccaaagctgccaacttgtctggctaccattgtagtc 160  Q
    ||| ||  ||||||| |||||||| ||||| |||| |||||    
T  26076192 tcttactcaagctgctaacttgtccggctatcattatagtc 26076232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 28786511 - 28786614
Alignment:
Q  57 gcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccattgt 156  Q
    ||||||||||| ||| |||||| | ||||| |||||| |||||||| | ||||||||| ||||||||||| ||||||| |||||||| |||||||||| |    
T  28786511 gcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattct 28786610  T
Q  157 agtc 160  Q
    ||||    
T  28786611 agtc 28786614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 28792632 - 28792735
Alignment:
Q  57 gcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccattgt 156  Q
    ||||||||||| ||| |||||| | ||||| |||||| |||||||| | ||||||||| ||||||||||| ||||||| |||||||| |||||||||| |    
T  28792632 gcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattct 28792731  T
Q  157 agtc 160  Q
    ||||    
T  28792732 agtc 28792735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 28781373 - 28781475
Alignment:
Q  58 catgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccattgta 157  Q
    |||||||||| ||| |||||| | ||||| |||||| |||||||| | ||||||||| ||||||||||| ||||||| |||||||| |||||||||| ||    
T  28781373 catgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattcta 28781472  T
Q  158 gtc 160  Q
    |||    
T  28781473 gtc 28781475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 160
Target Start/End: Original strand, 27214649 - 27214756
Alignment:
Q  53 ctaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctacca 152  Q
    ||||||||||| ||| ||| ||||||||||||||||||||| || ||||| || |||||||||| ||||| | | ||||||| ||||| |||||||| ||    
T  27214649 ctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatca 27214748  T
Q  153 ttgtagtc 160  Q
    || |||||    
T  27214749 ttatagtc 27214756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 27234579 - 27234472
Alignment:
Q  53 ctaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctacca 152  Q
    ||||||||||| ||| ||| ||||||||||||||||||||| || ||||| || |||||||||| ||||| | | ||||||| ||||| |||||||| ||    
T  27234579 ctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatca 27234480  T
Q  153 ttgtagtc 160  Q
    || |||||    
T  27234479 ttatagtc 27234472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 26646689 - 26646827
Alignment:
Q  34 agttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctg 133  Q
    ||||| ||||| ||||| |||||||| ||| |||  ||||||||||||||| |||||| | |  | ||| | ||||||||| ||||||||||| ||||||    
T  26646689 agttatggtgaacatctcactaagcacgaagagagtttccaaaataacaagaaaaacaaggaacgattgcatcaatggaagttggctctgacccaagctg 26646788  T
Q  134 ccaacttgtctggctaccattgtagtcaagggtacccca 172  Q
    | |||||||| || ||||||| |||||  ||||||||||    
T  26646789 ctaacttgtccggataccattatagtcctgggtacccca 26646827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 26752657 - 26752795
Alignment:
Q  34 agttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctg 133  Q
    ||||| ||||| ||||| |||||||| ||| |||  ||||||||||||||| |||||| | |  | ||| | ||||||||| ||||||||||| ||||||    
T  26752657 agttatggtgaacatctcactaagcacgaagagagtttccaaaataacaagaaaaacaaggaacgattgcatcaatggaagttggctctgacccaagctg 26752756  T
Q  134 ccaacttgtctggctaccattgtagtcaagggtacccca 172  Q
    | |||||||| || ||||||| |||||  ||||||||||    
T  26752757 ctaacttgtccggataccattatagtcctgggtacccca 26752795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 26143064 - 26143201
Alignment:
Q  23 atcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctct 122  Q
    |||||| ||| | ||| |||||||||||||||||||||||| ||| ||| ||||||||| || |||||||| || | |||   ||||||||||| |||||    
T  26143064 atcagagtgggatttatggtgagcatcttactaagcatgaagagaggtttcaaaataacgagaaaaacatggagcgattgcgtcaatggaagatagctct 26143163  T
Q  123 gaccaaagctgccaacttgtctggctaccattgtagtc 160  Q
     | | ||||||| |||||||| ||||| |||| |||||    
T  26143164 tatccaagctgctaacttgtccggctatcattatagtc 26143201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 25538736 - 25538876
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 119  Q
    ||||||||| ||| ||||| ||||||||| |||||||||||||| ||| ||| ||||||||  || |||||||| || | |||   ||||||||||| ||    
T  25538736 gacatcagagtgggagttatggtgagcattttactaagcatgaagagaggtttcaaaataatgagaaaaacatggagcgattgcgtcaatggaagatagc 25538835  T
Q  120 tctgaccaaagctgccaacttgtctggctaccattgtagtc 160  Q
    ||| | | ||||||| |||||||| ||||| |||| |||||    
T  25538836 tcttatccaagctgctaacttgtccggctatcattatagtc 25538876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 28234802 - 28234861
Alignment:
Q  63 aaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctct 122  Q
    |||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||    
T  28234802 aaagaagttccaaaataacaaggataacatggagaggttgcagaaatggaagatggctct 28234861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 26824062 - 26824185
Alignment:
Q  46 catcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctg 145  Q
    ||||| |||||||||||||||| ||||  ||||||||||||||||||| |||  |||   |||||||||| ||||||||   |||||||  |||||||||    
T  26824062 catctcactaagcatgaaaagaggttcggaaataacaaggaaaacatggagaaattgcttcaatggaagaaggctctgaaacaagctgctgacttgtctg 26824161  T
Q  146 gctaccattgtagtcaagggtacc 169  Q
    |||  |||| |||||  |||||||    
T  26824162 gctttcattttagtcttgggtacc 26824185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 26802674 - 26802771
Alignment:
Q  56 agcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccat 153  Q
    |||||||||| | ||| |||||| | ||||| |||||| |||||||||||| ||||||  ||||||||| | | ||||| |||||||| |||||||||    
T  26802674 agcatgaaaaaaggtttcaaaatgataaggataacatggagaggttggagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccat 26802771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 172
Target Start/End: Original strand, 26861842 - 26861961
Alignment:
Q  53 ctaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctacca 152  Q
    ||||||||||||| | ||| |||||| | | ||| |||||| |||||||| ||  ||||||  | ||||||| | ||||||| |||||||| ||||||||    
T  26861842 ctaagcatgaaaaaaggtttcaaaatgatatggataacatggagaggttgcagagatggaaagttgctctgaaccaagctgctaacttgtcaggctacca 26861941  T
Q  153 ttgtagtcaagggtacccca 172  Q
    || |||||  ||||||||||    
T  26861942 ttttagtcctgggtacccca 26861961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 28185605 - 28185696
Alignment:
Q  63 aaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccatt 154  Q
    |||||||||||||||||||||||| | |||| |||||||| || |||||||||  ||||| ||  || |||| ||||| |||||| ||||||    
T  28185605 aaagaagttccaaaataacaaggatagcatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatt 28185696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 25481952 - 25482078
Alignment:
Q  34 agttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctg 133  Q
    ||||| |||||  |||| |||||||||||| ||  ||||||||||||| || |||||||| || | |||   ||||||||||||||||| ||  ||||||    
T  25481952 agttatggtgaatatctgactaagcatgaagaggggttccaaaataacgagaaaaacatggagcgattgcgtcaatggaagatggctcttactcaagctg 25482051  T
Q  134 ccaacttgtctggctaccattgtagtc 160  Q
    | || ||||| ||||| |||| |||||    
T  25482052 ctaatttgtccggctatcattatagtc 25482078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 26617867 - 26617920
Alignment:
Q  69 gttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctct 122  Q
    ||||||||||||||||||||||||| || ||||| || |||||||||| |||||    
T  26617867 gttccaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctct 26617920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 26723795 - 26723848
Alignment:
Q  69 gttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctct 122  Q
    ||||||||||||||||||||||||| || ||||| || |||||||||| |||||    
T  26723795 gttccaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctct 26723848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 26949890 - 26949991
Alignment:
Q  53 ctaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctacca 152  Q
    ||||||||||| ||| ||||||||| | |||  |||||||| || |||||  | |||||||||| ||||||| ||||| |||  |||| |||||||||||    
T  26949890 ctaagcatgaagagaggttccaaaagagcaaaaaaaacatggagcggttgctgaaatggaagatagctctgaacaaagttgctgacttatctggctacca 26949989  T
Q  153 tt 154  Q
    ||    
T  26949990 tt 26949991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 26959395 - 26959496
Alignment:
Q  53 ctaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctacca 152  Q
    ||||||||||| || |||| ||||||| ||||||||||||| || |||||  | |||||||||  ||||| | | ||||||| ||||| |||||| ||||    
T  26959395 ctaagcatgaagagcagtttcaaaatagcaaggaaaacatggagcggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctggccacca 26959494  T
Q  153 tt 154  Q
    ||    
T  26959495 tt 26959496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 27718334 - 27718237
Alignment:
Q  56 agcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccat 153  Q
    |||||||||||| ||| |||||| | ||| | |||||| |||||||| ||| ||||||  ||||||||| | | ||||| |||||||| |||||||||    
T  27718334 agcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccat 27718237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 28297659 - 28297570
Alignment:
Q  65 agaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccatt 154  Q
    |||||||||||||||||||| | |||||| |||||||| || |||||||||  ||||| ||  || |||| ||||| |||||| ||||||    
T  28297659 agaagttccaaaataacaagaataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatt 28297570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 28514414 - 28514503
Alignment:
Q  65 agaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccatt 154  Q
    |||||||||||||||||||| | |||||| |||||||| || |||||||||  ||||| ||  || |||| ||||| |||||| ||||||    
T  28514414 agaagttccaaaataacaagaataacatggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccatt 28514503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 26049041 - 26049084
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaa 63  Q
    ||||||| | ||||||||| ||||||||||||||||||||||||    
T  26049041 gacatcatagtggaagttatggtgagcatcttactaagcatgaa 26049084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 26070210 - 26070253
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaa 63  Q
    ||||||| | ||||||||| ||||||||||||||||||||||||    
T  26070210 gacatcatagtggaagttatggtgagcatcttactaagcatgaa 26070253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 25506961 - 25506848
Alignment:
Q  34 agttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctg 133  Q
    ||||| |||||  |||| |||||||||||| ||||||| |||||||| ||| |||||||| |||| | | | |||||||| || ||||| ||  || |||    
T  25506961 agttatggtgaagatctgactaagcatgaagagaagtttcaaaataataagaaaaacatggagagatcgcatcaatggaaaatagctctaacacaatctg 25506862  T
Q  134 ccaacttgtctggc 147  Q
    | ||| ||||||||    
T  25506861 ctaacctgtctggc 25506848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 26635919 - 26636020
Alignment:
Q  53 ctaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctacca 152  Q
    ||||||||||| |  |||| ||||||| ||||||||||||| || |||||  | |||||||||  ||||| | | ||||||| ||||| |||||| ||||    
T  26635919 ctaagcatgaagatcagtttcaaaatagcaaggaaaacatggagtggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctggccacca 26636018  T
Q  153 tt 154  Q
    ||    
T  26636019 tt 26636020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 26741885 - 26741986
Alignment:
Q  53 ctaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctacca 152  Q
    ||||||||||| |  |||| ||||||| ||||||||||||| || |||||  | |||||||||  ||||| | | ||||||| ||||| |||||| ||||    
T  26741885 ctaagcatgaagatcagtttcaaaatagcaaggaaaacatggagtggttgctgaaatggaagaaagctcttaaccaagctgctaacttatctggccacca 26741984  T
Q  153 tt 154  Q
    ||    
T  26741985 tt 26741986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 26811754 - 26811807
Alignment:
Q  69 gttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctct 122  Q
    ||||||||||||||||||||||||| |  ||||| || |||||||||| |||||    
T  26811754 gttccaaaataacaaggaaaacatggatcggttgcagaaatggaagatagctct 26811807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 18655455 - 18655315
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 119  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||   |||||| ||||||||||||||| |||||||| || ||||| | ||||||||| ||||    
T  18655455 gacatcaaactggaagttatggtgaacatctcactaagcacagaaagaatttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttggc 18655356  T
Q  120 tctgaccaaagctgccaacttgtctggctaccattgtagtc 160  Q
    ||||||| ||||||| |||||||| |||||||||| |||||    
T  18655355 tctgaccgaagctgctaacttgtccggctaccattctagtc 18655315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 18731482 - 18731334
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 119  Q
    ||||||| | ||| ||||| ||||| ||||| ||||||||  ||||||  ||||||||||||||| |||||||| || ||||| | ||||||||| ||||    
T  18731482 gacatcaaagtgggagttatggtgaacatctcactaagcacaaaaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttggc 18731383  T
Q  120 tctgaccaaagctgccaacttgtctggctaccattgtagtcaagggtac 168  Q
    ||||||| ||||||| |||||||| |||||||||| |||||| ||||||    
T  18731382 tctgaccgaagctgctaacttgtccggctaccattttagtcatgggtac 18731334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 18699378 - 18699239
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 119  Q
    ||||||| | ||| ||||| ||||| ||||| |||||||| | |||||  ||||||||||||||| |||||||| || ||||| | ||||||||| | ||    
T  18699378 gacatcaaagtgggagttatggtgaacatctcactaagcacggaaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagc 18699279  T
Q  120 tctgaccaaagctgccaacttgtctggctaccattgtagt 159  Q
    ||||||| ||||||| |||||||| |||||||||| ||||    
T  18699278 tctgaccgaagctgctaacttgtccggctaccattttagt 18699239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 18724049 - 18723923
Alignment:
Q  34 agttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctg 133  Q
    ||||| ||||| ||||| ||||||||  ||| ||  ||||||||||||||| |||||||| || ||||| | ||||||||| ||||||||||| ||||||    
T  18724049 agttatggtgaacatctcactaagcacaaaatgagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctg 18723950  T
Q  134 ccaacttgtctggctaccattgtagtc 160  Q
    | |||||||| |||||||||| |||||    
T  18723949 ctaacttgtccggctaccattttagtc 18723923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 18679547 - 18679405
Alignment:
Q  18 atgacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatg 117  Q
    ||||||||| | ||| ||||| ||||| ||||| ||||| ||   |||||  ||||||||||||||  |||||||| || ||||| | ||||||||| |     
T  18679547 atgacatcaaagtggtagttatggtgaacatctcactaatcactgaaagagtttccaaaataacaataaaaacatggagcggttgcatcaatggaagtta 18679448  T
Q  118 gctctgaccaaagctgccaacttgtctggctaccattgtagtc 160  Q
    ||||||||| ||||||| |||||||| |||||||||| |||||    
T  18679447 gctctgaccgaagctgctaacttgtccggctaccattttagtc 18679405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 268335 - 268195
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 119  Q
    ||||||| | ||| ||||| ||||| ||||| |||||||| ||| |||  |||||||||| |||| |||||||| || ||||| | ||||||||| ||||    
T  268335 gacatcaaagtgggagttatggtgaacatctcactaagcacgaagagagtttccaaaatagcaagaaaaacatggagcggttgcatcaatggaagttggc 268236  T
Q  120 tctgaccaaagctgccaacttgtctggctaccattgtagtc 160  Q
    ||||||| ||||| | ||||||||||||||||||| |||||    
T  268235 tctgacccaagcttctaacttgtctggctaccattctagtc 268195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 28164314 - 28164192
Alignment:
Q  47 atcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctgg 146  Q
    |||||||||||||||   ||| |||||||||||||||| |||||||| || | ||| | ||||||||||| ||||| ||| ||||||| |||||||| ||    
T  28164314 atcttactaagcatggtgagaggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccgg 28164215  T
Q  147 ctaccattgtagtcaagggtacc 169  Q
    |||||||| ||||| ||||||||    
T  28164214 ctaccattatagtccagggtacc 28164192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 28127624 - 28127507
Alignment:
Q  53 ctaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctacca 152  Q
    ||||||||| | ||| |||||||||||||||| |||||||| || | ||| | ||||||||||| ||||| ||| ||||||| |||||||| ||||||||    
T  28127624 ctaagcatggagagaggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccggctacca 28127525  T
Q  153 ttgtagtcaagggtaccc 170  Q
    || ||||| |||||||||    
T  28127524 ttatagtccagggtaccc 28127507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 4626 - 4514
Alignment:
Q  56 agcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccattg 155  Q
    |||||||||||| ||| |||||| | ||| | |||||| |||||||| | ||||||||| ||||||||||| ||||||| |||||||| ||||||||||     
T  4626 agcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattc 4527  T
Q  156 tagtcaagggtac 168  Q
    |||||| ||||||    
T  4526 tagtcatgggtac 4514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 13585 - 13475
Alignment:
Q  58 catgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccattgta 157  Q
    |||||||||| ||| |||||| | ||| | |||||| || | ||| | ||||||||| ||||||||||| ||||||| |||||||| |||||||||| ||    
T  13585 catgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattcta 13486  T
Q  158 gtcaagggtac 168  Q
    |||| ||||||    
T  13485 gtcatgggtac 13475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 29273761 - 29273613
Alignment:
Q  20 gacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggc 119  Q
    ||||||| | ||| ||||| ||||| ||||| |||||| | ||| |||  |||||||||| |||| |||||||| |  ||||| | ||||||||| ||||    
T  29273761 gacatcaaagtgggagttatggtgaacatctcactaagtacgaagagagtttccaaaatagcaagaaaaacatggatcggttgcatcaatggaagttggc 29273662  T
Q  120 tctgaccaaagctgccaacttgtctggctaccattgtagtcaagggtac 168  Q
    ||||||| ||||| | ||||||||||||||||||| |||||| ||||||    
T  29273661 tctgacccaagcttctaacttgtctggctaccattctagtcatgggtac 29273613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 34964 - 35023
Alignment:
Q  63 aaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctct 122  Q
    |||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||||    
T  34964 aaagaagttccaaaataacaaggataacatggagaggttgcagaaatggaagatggctct 35023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 7759 - 7869
Alignment:
Q  58 catgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccattgta 157  Q
    |||||||||| ||| |||||| | ||| | |||||| || | ||| | ||||||||| ||||||||||| ||||||| |||||||| |||||||||| ||    
T  7759 catgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattcta 7858  T
Q  158 gtcaagggtac 168  Q
    |||| ||||||    
T  7859 gtcatgggtac 7869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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