View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_high_10 (Length: 358)
Name: NF7723_high_10
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 22748215 - 22748546
Alignment:
| Q |
9 |
tgcgatgtcatcaacttaggagaaagctctcaaggacaaattatgaaaacaacttgaatcttatttgaaaatagttttactttattgtcttttattatat |
108 |
Q |
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| T |
22748215 |
tgcgatgtcatcaacttaggagaaagctctcaaggacaaattatgaaaacaacttgaatcttatttgaaaatcgttttactttattgtcttttattatat |
22748314 |
T |
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| Q |
109 |
aaatatgttatatataagcacttttatggtaagcttttattgtataagctctgaattaaattgttttttcaaacaagattaaggttgaaatcttaaaatc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22748315 |
aaatatgttatatataagcacttttatggtaagcttttattgtataagctctgaattaaattgttttttcaaacaagattaaggttgaaatcttaaaatc |
22748414 |
T |
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| Q |
209 |
aaagacagtatggtgcaaattacttacctgataccaaatgctgattgttgtcataggaataaagacaatgaaaacctgccatgcaacctgagacatcacc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22748415 |
aaagacagtatggtgcaaattacttacctgataccaaatgctgattgctgtcataggaataaagacaatgaaaacctgccatgcaacctgagacatcacc |
22748514 |
T |
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| Q |
309 |
attataattccagcgagatggattatggagca |
340 |
Q |
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| T |
22748515 |
attataattccaacgagatggattatggagca |
22748546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 41436714 - 41436789
Alignment:
| Q |
232 |
ttacctgataccaaatgctgattgttgtcataggaataaagacaatgaaaacctgccatgcaacctgagacatcac |
307 |
Q |
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| T |
41436714 |
ttacctgatacgaaatgctaattgctatgatgggtataaagacaatgaaaacttgccatgcaacctgagacatcac |
41436789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 41449926 - 41450001
Alignment:
| Q |
232 |
ttacctgataccaaatgctgattgttgtcataggaataaagacaatgaaaacctgccatgcaacctgagacatcac |
307 |
Q |
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| T |
41449926 |
ttacctgataccaaatgctaactgctatcacgggtataaagacaatgaaaacttgccatgcaacctgagacatcac |
41450001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 320
Target Start/End: Original strand, 14238861 - 14238948
Alignment:
| Q |
233 |
tacctgataccaaatgctgattgttgtcataggaataaagacaatgaaaacctgccatgcaacctgagacatcaccattataattcca |
320 |
Q |
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| T |
14238861 |
tacctgataccaaatgctgactactattacgggtataaagacaatgaaaacttgccatgcaacctgagacatcacggctataattcca |
14238948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 14375271 - 14375200
Alignment:
| Q |
233 |
tacctgataccaaatgctgattgttgtcataggaataaagacaatgaaaacctgccatgcaacctgagacat |
304 |
Q |
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| T |
14375271 |
tacctgataccaaatgctgactgctatcatgggtaaaaatacgatgaaaacttgccatgcaacctgagacat |
14375200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 17952754 - 17952848
Alignment:
| Q |
49 |
ttatgaaaacaacttgaatcttatttgaaaatagttttacttta--ttgtcttttattatataaatatgttatatataagcacttttatggtaag |
141 |
Q |
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| T |
17952754 |
ttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataag |
17952848 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 19624224 - 19624149
Alignment:
| Q |
68 |
cttatttgaaaatagttttacttta--ttgtcttttattatataaatatgttatatataagcacttttatggtaag |
141 |
Q |
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||||| ||||||||||||||||||| ||| ||| | ||||| |||||| |||||||||||| ||| |||| |||| |
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| T |
19624224 |
cttatatgaaaatagttttactttattttgccttatcttatagaaatatcttatatataagcccttatatgataag |
19624149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 49560661 - 49560701
Alignment:
| Q |
96 |
tcttttattatataaatatgttatatataagcacttttatg |
136 |
Q |
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|||||| |||||||||||| |||||||||||||||| |||| |
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| T |
49560661 |
tcttttgttatataaatatattatatataagcacttatatg |
49560701 |
T |
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