View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7723_high_12 (Length: 324)
Name: NF7723_high_12
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 31204826 - 31205115
Alignment:
| Q |
18 |
atacctaatgcctaaaatcatgctcacttggttatttacgttactattaccttttgtctttcgttactattaaataaaggctagtaacaaatatataagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31204826 |
atacctaatgcctaaaatcatgctcagttggttatttacgttactattaccttttgtctttcattactattaaataaaggctagtaacaaatatataagc |
31204925 |
T |
|
| Q |
118 |
----catttcattgtactactttgatattgagaaataattcaattcaatcattggaaacctaattggttattccttttcatcttttatttattctcacac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
31204926 |
aagccatttcattgtactactttgatattgagaaataattcaatttaatcattggaaacctaattggttatttcttttcatcttttatttattctcatat |
31205025 |
T |
|
| Q |
214 |
ggttttagagacagtgagatccatggctccttgcaacaacgcttcagcatccaatgatcagggtgccccaacgattgatccatcgagtcc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31205026 |
ggttttagagacagtgagatccatggctccttgcaacaacgcttcagcatccaatgatcagggtgccccaacgattgatccatcgagtcc |
31205115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 108 - 317
Target Start/End: Complemental strand, 18436431 - 18436225
Alignment:
| Q |
108 |
atatataagccatttcattgtactactttgatattgagaaataattcaattcaatcattggaaacctaattggttattcctttt-catcttttatttatt |
206 |
Q |
| |
|
||||||| ||| ||||||| |||| |||| ||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
18436431 |
atatatatgccttttcattatactgagttgacattgagaaataattcaatt-----attggaaacctaattggttatccctttttcatcttttacttatt |
18436337 |
T |
|
| Q |
207 |
ctcacacggttttagaga-cagtgagatccatggctccttgcaacaacgcttcagcatccaatgatcagggtgccccaacgattgatccatcgagtccct |
305 |
Q |
| |
|
|||| | ||| | | ||| | || ||||||||||| ||| ||||||| |||||| |||| ||||| |||||||| ||| | ||||||||||| ||||| | |
|
|
| T |
18436336 |
ctcatatggtatcatagagccgtaagatccatggcacctcgcaacaatgcttcaacatctaatgagcagggtgctccagcaattgatccatcaagtcctt |
18436237 |
T |
|
| Q |
306 |
atgatgtccatc |
317 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
18436236 |
attatgtccatc |
18436225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 18431836 - 18431738
Alignment:
| Q |
108 |
atatataagccatttcattgtactactttgatattgagaaataattcaattcaatcattggaaacctaattggttattcc-ttttcatcttttatttatt |
206 |
Q |
| |
|
||||||| ||| ||||||| |||| |||| ||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||| |
|
|
| T |
18431836 |
atatatatgccttttcattatactgagttgacattgagaaataattcaatt-----attggaaacctaattggttatccctttttcatcttttacttatt |
18431742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 30151677 - 30151775
Alignment:
| Q |
155 |
aattcaatcattggaaacctaattggttattcc-ttttcatcttttatttattctcacacggttttagaga-cagtgagatccatggctccttgcaaca |
251 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||| | ||| | | ||| | |||||||||||||| ||| |||||| |
|
|
| T |
30151677 |
aattcaattattggaaacctaattggttatccctttttcatcttttacttattctcatatggtatcatagagccgtgagatccatggcacctcgcaaca |
30151775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University