View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7723_high_15 (Length: 286)

Name: NF7723_high_15
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7723_high_15
NF7723_high_15
[»] chr2 (5 HSPs)
chr2 (119-264)||(11558823-11558968)
chr2 (12-131)||(11545294-11545418)
chr2 (154-218)||(11545424-11545488)
chr2 (96-131)||(11558755-11558790)
chr2 (20-56)||(11558804-11558840)
[»] chr8 (1 HSPs)
chr8 (119-206)||(12064015-12064102)
[»] chr7 (2 HSPs)
chr7 (119-187)||(20916225-20916293)
chr7 (119-187)||(20915807-20915875)


Alignment Details
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 119 - 264
Target Start/End: Complemental strand, 11558968 - 11558823
Alignment:
Q  119 caattgaagcatatatcacatatgaccccacagatgatgtgaaactttcttgtagaatcaccatttgcctctgagtagggatgaatgattggtccccatg 218  Q
    |||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||    
T  11558968 caattggagcatatataacatatgaccccacggatgatgtgaaactttcttgtagaatcaccatttgcctctgagtagggatgaatgactggtccatatg 11558869  T
Q  219 nnnnnnnnttggaatcaatataattaattataagtgattggatgtt 264  Q
            ||||||||||||||||||||||||||||||||||||||    
T  11558868 aaaaaaaattggaatcaatataattaattataagtgattggatgtt 11558823  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 11545418 - 11545294
Alignment:
Q  12 aataattatataagtaattggatgttgtatactataccgaataaatttagggctatttaccaaca--aaaacaa---tctagggcataggagttgtcata 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||| ||   |||||||||||||||||||||||    
T  11545418 aataattatataagtaattggatgttgtatactataccgaataaatttagggctatttaccaaaaataaaataaaattctagggcataggagttgtcata 11545319  T
Q  107 attttatatacacaattgaagcata 131  Q
    |||||||||||||||||||||||||    
T  11545318 attttatatacacaattgaagcata 11545294  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 11545488 - 11545424
Alignment:
Q  154 gatgtgaaactttcttgtagaatcaccatttgcctctgagtagggatgaatgattggtccccatg 218  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||||| ||||    
T  11545488 gatgtgaaactttcttgtagaatcatcatttgcctttgagtagggatgaatggctggtccacatg 11545424  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 131
Target Start/End: Complemental strand, 11558790 - 11558755
Alignment:
Q  96 gagttgtcataattttatatacacaattgaagcata 131  Q
    |||||||||| |||||||||||||||||||||||||    
T  11558790 gagttgtcatcattttatatacacaattgaagcata 11558755  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 11558840 - 11558804
Alignment:
Q  20 tataagtaattggatgttgtatactataccgaataaa 56  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  11558840 tataagtgattggatgttatatactataccgaataaa 11558804  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 12064015 - 12064102
Alignment:
Q  119 caattgaagcatatatcacatatgaccccacagatgatgtgaaactttcttgtagaatcaccatttgcctctgagtagggatgaatga 206  Q
    |||||| ||||||||| | |||||||||||| |  |||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  12064015 caattggagcatatataatatatgaccccaccggagatgtgaaactttcctgcagaataaccatttgcctctgagtagggatgaatga 12064102  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 20916293 - 20916225
Alignment:
Q  119 caattgaagcatatatcacatatgaccccacagatgatgtgaaactttcttgtagaatcaccatttgcc 187  Q
    |||||||||||||||| |||||||| ||||||   ||||||||||||||||||||||||| ||||||||    
T  20916293 caattgaagcatatataacatatgatcccacatgagatgtgaaactttcttgtagaatcatcatttgcc 20916225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 20915807 - 20915875
Alignment:
Q  119 caattgaagcatatatcacatatgaccccacagatgatgtgaaactttcttgtagaatcaccatttgcc 187  Q
    |||||| ||||||||| ||||||||  ||| |   |||||||||||||| |||||||||||||||||||    
T  20915807 caattggagcatatataacatatgattccatatgagatgtgaaactttcctgtagaatcaccatttgcc 20915875  T

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