View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_high_18 (Length: 269)
Name: NF7723_high_18
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 45675715 - 45675479
Alignment:
| Q |
18 |
tacaaacgtgctattgtgtgttgcaaacaggaaaccaaagatacaccaaatctactttaaaacaatcaaacacatcaaaatcaatataacatctctaccg |
117 |
Q |
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| T |
45675715 |
tacaaacgtgttattgtgtgttgcaaacgggaaaccaaagatacaccaaatctactttaaaacaatcaaacacatcaaaatcaatataacatttctaccg |
45675616 |
T |
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| Q |
118 |
tcgattttgatcccttcaaagtgaacgaaacatacactcaagcagcatatggtactagccatggagtatgtaaaattaaattaaaatactcacatttaca |
217 |
Q |
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| T |
45675615 |
tcgattttgatcccttcaaagtgaacgaaacatacactcaagcagcatatggtactagccatggagaatgtaaaattaaattaagatactcacatttaca |
45675516 |
T |
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| Q |
218 |
ttagatgaaatattaaagtttttacatactcctttct |
254 |
Q |
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| T |
45675515 |
ttagatgaaatattaaagtacgtacatactcctttct |
45675479 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 43292839 - 43292875
Alignment:
| Q |
20 |
caaacgtgctattgtgtgttgcaaacaggaaaccaaa |
56 |
Q |
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| T |
43292839 |
caaacgtgcttttgtgtggtgcaaacaggaaaccaaa |
43292875 |
T |
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