View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_high_5 (Length: 438)
Name: NF7723_high_5
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Complemental strand, 31590138 - 31589716
Alignment:
| Q |
16 |
acatcacaactgccttctgactctattctctcagtgacgagcagtagattttctgattggcaggaaacaaagtggtacgcaacaggccatcagagtggtg |
115 |
Q |
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| T |
31590138 |
acatcacaactgccttctgactctattctctcagtgacgagcagtagattttctgattggcaggaaacaaagtggtacgcaacaggccatcagagtggtg |
31590039 |
T |
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| Q |
116 |
ctgtcaaagtgtggcaaatggttcactgctctgacccagatagctctctcagcaaatcaggtgcaggtgggttcagagtgttaaaccttggtgcaaaaga |
215 |
Q |
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| T |
31590038 |
ctgtcaaagtgtggcaaatggttcactgctctgacccagatagctctctcagcaaatcaggtgcaagtgggttcagagtgttaaaccttggtgcaaaaga |
31589939 |
T |
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| Q |
216 |
gccagaatacagattgatcctacgcaaggtactcaagttccataagcatccggttactgctcttcatctcacaatcgatctgaagcagttattaagtggg |
315 |
Q |
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| T |
31589938 |
gccagaatacagattgatcctacgcaaggtactcaagttccataagcatccggttactgctcttcatctcacaatcgatctgaagcagttattaagtggg |
31589839 |
T |
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| Q |
316 |
gattcaggagggcatttgctttcctggacactgcctgatgagagtctgcgaggttcattaaatcaggggtgaagcctgtgaatgataattaattgtgctg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31589838 |
gattcaggagggcatttgctttcctggacactgcctgatgagagtctgcgaggttcattaaatcaggggtgaagcctgtgaatgataattaattgtgctg |
31589739 |
T |
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| Q |
416 |
actttggcttttgaccagccttt |
438 |
Q |
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| T |
31589738 |
actttggcttttgaccagccttt |
31589716 |
T |
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