View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7723_high_7 (Length: 395)

Name: NF7723_high_7
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7723_high_7
NF7723_high_7
[»] scaffold0586 (2 HSPs)
scaffold0586 (44-219)||(9867-10042)
scaffold0586 (224-383)||(10079-10238)
[»] chr1 (3 HSPs)
chr1 (46-219)||(22894083-22894256)
chr1 (260-383)||(22902386-22902509)
chr1 (224-269)||(22894293-22894338)
[»] chr6 (3 HSPs)
chr6 (44-219)||(19701439-19701614)
chr6 (220-329)||(19701647-19701756)
chr6 (325-383)||(19702429-19702487)
[»] chr8 (4 HSPs)
chr8 (67-219)||(10637937-10638089)
chr8 (224-371)||(32717339-32717486)
chr8 (224-371)||(10638126-10638272)
chr8 (44-163)||(32717552-32717672)
[»] chr2 (1 HSPs)
chr2 (255-383)||(26662125-26662253)
[»] chr7 (1 HSPs)
chr7 (215-379)||(38935389-38935555)


Alignment Details
Target: scaffold0586 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 9867 - 10042
Alignment:
Q  44 ctttgttacttaatgaattagttatgtacagattcaattgttttaaattgtagatttaatactcaaataaaatgttaatacgggaaaattatgtatcaga 143  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| ||    
T  9867 ctttgatacttaatgaattagtcatgtacagattcaattgttttaaattgtagatttaatactcaaataaattgctagtacgggaaaattatgtatcgga 9966  T
Q  144 attttaaattgtagattttaaagtgtatgaactatgaagtatatatcagaatttaactcctctaaaataagtgaaa 219  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9967 attttaaactgtagattttaaagtgtatgaactatgaattatatatcagaatttaactcctctaaaataagtgaaa 10042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 224 - 383
Target Start/End: Original strand, 10079 - 10238
Alignment:
Q  224 aaagtgctcataatctcaatcattaaatacattgtgtacctggaaccatgtagccgtaggatccaccaactgagctcctggttgtattgttaaagctcaa 323  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| || ||||||||||||| ||||||||||||||||| |     
T  10079 aaagtgctcataatctcaatcattaaatacattgtgtacttggaaccgtgtagccataggatacaacaactgagctcctagttgtattgttaaagcttag 10178  T
Q  324 caacttgataatgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgt 383  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10179 caacttgatagtgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgt 10238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 22894083 - 22894256
Alignment:
Q  46 ttgttacttaatgaattagttatgtacagattcaattgttttaaattgtagatttaatactcaaataaaatgttaatacgggaaaattatgtatcagaat 145  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||   |||||| || || ||||||||||||||||||||||||    
T  22894083 ttgttacttaatgaattagtcatgtacaaattcaattgttttaaattgtagatttaatacaataataaattgctagtacgggaaaattatgtatcagaat 22894182  T
Q  146 tttaaattgtagattttaaagtgtatgaactatgaagtatatatcagaatttaactcctctaaaataagtgaaa 219  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22894183 tttaaactgtagattttaaagtgtatgaactatgaagtatatatcagaatttaactcctttaaaataagtgaaa 22894256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 260 - 383
Target Start/End: Original strand, 22902386 - 22902509
Alignment:
Q  260 tacctggaaccatgtagccgtaggatccaccaactgagctcctggttgtattgttaaagctcaacaacttgataatgaaaatctgcaagatgtggtacat 359  Q
    ||||||||||| ||||||| |||||| || ||||||||||||| |||||||||||||| || | ||| |||||| |||||||||| ||||||||||||||    
T  22902386 tacctggaaccgtgtagccataggatacaacaactgagctcctagttgtattgttaaaacttagcaatttgatagtgaaaatctgtaagatgtggtacat 22902485  T
Q  360 aatctaagtcaagtagtatgatgt 383  Q
    ||||||||||||||||||||||||    
T  22902486 aatctaagtcaagtagtatgatgt 22902509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 22894293 - 22894338
Alignment:
Q  224 aaagtgctcataatctcaatcattaaatacattgtgtacctggaac 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22894293 aaagtgctcataatctcaatcattaaatacattgtgtacctggaac 22894338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 19701439 - 19701614
Alignment:
Q  44 ctttgttacttaatgaattagttatgtacagattcaattgttttaaattgtagatttaatactcaaataaaatgttaatacgggaaaattatgtatcaga 143  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || || || |||||||| |||||||| |    
T  19701439 ctttgttacttaacgaattagtcatgtatagattcaattgttttaaattgtagatttaatactcaaataaattgctagtatgggaaaatcatgtatcaaa 19701538  T
Q  144 attttaaattgtagattttaaagtgtatgaactatgaagtatatatcagaatttaactcctctaaaataagtgaaa 219  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19701539 attttaaactgtagattttaaagtgtatgaagtatgaagtatatatcagaatttaactcctctaaaataagtgaaa 19701614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 220 - 329
Target Start/End: Original strand, 19701647 - 19701756
Alignment:
Q  220 tatgaaagtgctcataatctcaatcattaaatacattgtgtacctggaaccatgtagccgtaggatccaccaactgagctcctggttgtattgttaaagc 319  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   ||| || || ||||||||||||| ||||||||||||||||    
T  19701647 tatgaaagtgctcaaaatctcaatcattaaatacattgtgtacctggaaccatgtagtaatagcatacaacaactgagctcctagttgtattgttaaagc 19701746  T
Q  320 tcaacaactt 329  Q
    | | ||||||    
T  19701747 ttagcaactt 19701756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 19702429 - 19702487
Alignment:
Q  325 aacttgataatgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgt 383  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19702429 aacttgatagtgaaaatctgcaagatgtggtacataatctaagacaagtagtatgatgt 19702487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 67 - 219
Target Start/End: Original strand, 10637937 - 10638089
Alignment:
Q  67 atgtacagattcaattgttttaaattgtagatttaatactcaaataaaatgttaatacgggaaaattatgtatcagaattttaaattgtagattttaaag 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| || |||||||||||    
T  10637937 atgtacagattcaattgttttaaattgtagatttaatactcaaataaattgctagtacgggaaaattatgtatcagaattttaaactgcagattttaaag 10638036  T
Q  167 tgtatgaactatgaagtatatatcagaatttaactcctctaaaataagtgaaa 219  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10638037 tgtatgaactatgaattatatatcagaatttaactcctctaaaataagtgaaa 10638089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 224 - 371
Target Start/End: Complemental strand, 32717486 - 32717339
Alignment:
Q  224 aaagtgctcataatctcaatcattaaatacattgtgtacctggaaccatgtagccgtaggatccaccaactgagctcctggttgtattgttaaagctcaa 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| || ||| ||||||||| ||||||||||||||||| ||    
T  32717486 aaagtgctcataatctcaatcattaaatacattgtgtacctggaaccgtgtagccataggatacaacaattgagctcctagttgtattgttaaagcttaa 32717387  T
Q  324 caacttgataatgaaaatctgcaagatgtggtacataatctaagtcaa 371  Q
    |||||||||| ||| ||| |||||||||||||||||||||||||||||    
T  32717386 caacttgatagtgagaatatgcaagatgtggtacataatctaagtcaa 32717339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 224 - 371
Target Start/End: Original strand, 10638126 - 10638272
Alignment:
Q  224 aaagtgctcataatctcaatcattaaatacattgtgtacctggaaccatgtagccgtaggatccaccaactgagctcctggttgtattgttaaagctcaa 323  Q
    |||||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||||| || ||||||||||||| |||||||||||||| || |     
T  10638126 aaagtgctcataatctcaatcattaa-tgcattgtgtacctggaaccgtgtagccataggatacaacaactgagctcctagttgtattgttaaaacttag 10638224  T
Q  324 caacttgataatgaaaatctgcaagatgtggtacataatctaagtcaa 371  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||    
T  10638225 caatttgatagtgaaaatctgcaagatgtggtacataatctaagtcaa 10638272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 32717672 - 32717552
Alignment:
Q  44 ctttgttacttaatgaattagttatgtacagattcaattgttttaaattgtagatttaatactc-aaataaaatgttaatacgggaaaattatgtatcag 142  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| || || || ||||||||||||||||||    
T  32717672 ctttgttacttaatgaattagtcatgtacatattcaattgttttaaattgtagatttaatactcaaaataaattgctagtaagggaaaattatgtatcag 32717573  T
Q  143 aattttaaattgtagatttta 163  Q
    |||||||||  ||||||||||    
T  32717572 aattttaaaccgtagatttta 32717552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 255 - 383
Target Start/End: Original strand, 26662125 - 26662253
Alignment:
Q  255 ttgtgtacctggaaccatgtagccgtaggatccaccaactgagctcctggttgtattgttaaagctcaacaacttgataatgaaaatctgcaagatgtgg 354  Q
    ||||||| || ||||||||||||| |||||| || ||||||||||||| ||||||||||||||||| |  ||||||||| ||||||||||||||||||||    
T  26662125 ttgtgtatctagaaccatgtagccataggatacatcaactgagctcctagttgtattgttaaagcttagtaacttgatagtgaaaatctgcaagatgtgg 26662224  T
Q  355 tacataatctaagtcaagtagtatgatgt 383  Q
    |||||||||||||||||||||||||||||    
T  26662225 tacataatctaagtcaagtagtatgatgt 26662253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 379
Target Start/End: Original strand, 38935389 - 38935555
Alignment:
Q  215 tgaaatatgaaagtgctcataatctcaatcattaaatacattgtgtacctggaaccatgtagccgtaggatccaccaactgagctcctggttgtattgtt 314  Q
    |||| ||||||| || | |||||||||||| |||||| ||||||||||||||| |||||||||| ||||||||  |||||||| |||  || | ||||||    
T  38935389 tgaactatgaaactgttgataatctcaatcgttaaatgcattgtgtacctggagccatgtagccataggatccggcaactgaggtccaagtcgaattgtt 38935488  T
Q  315 aaagctcaacaacttgataatg--aaaatctgcaagatgtggtacataatctaagtcaagtagtatg 379  Q
    | || | | || |||   | ||  ||||||||||||||| |||||||||||| ||||||||||||||    
T  38935489 agagtttagcagctttgcagtgccaaaatctgcaagatgaggtacataatctgagtcaagtagtatg 38935555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University