View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7723_low_10 (Length: 642)

Name: NF7723_low_10
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7723_low_10
NF7723_low_10
[»] chr1 (5 HSPs)
chr1 (14-436)||(8425134-8425556)
chr1 (14-199)||(30234221-30234406)
chr1 (430-626)||(8425578-8425775)
chr1 (240-436)||(30235361-30235552)
chr1 (198-243)||(30235004-30235049)
[»] chr3 (2 HSPs)
chr3 (14-392)||(1530477-1530854)
chr3 (209-306)||(26797819-26797915)
[»] chr5 (5 HSPs)
chr5 (14-392)||(22475860-22476237)
chr5 (157-436)||(26849095-26849358)
chr5 (14-133)||(26842255-26842378)
chr5 (279-392)||(15425483-15425591)
chr5 (458-487)||(26849420-26849449)
[»] chr4 (3 HSPs)
chr4 (240-393)||(5690016-5690166)
chr4 (262-393)||(25154144-25154270)
chr4 (198-241)||(25153751-25153794)
[»] chr2 (2 HSPs)
chr2 (240-393)||(29759042-29759190)
chr2 (198-243)||(29758696-29758741)
[»] chr7 (4 HSPs)
chr7 (58-199)||(39327811-39327952)
chr7 (244-308)||(39327292-39327356)
chr7 (198-243)||(39327668-39327713)
chr7 (198-243)||(39718781-39718826)
[»] chr8 (1 HSPs)
chr8 (209-308)||(8396719-8396817)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 8425134 - 8425556
Alignment:
Q  14 acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctga 113  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8425134 acatcatctccgtgaagggaatcaaaggtaggttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgtagaagggaaaacctga 8425233  T
Q  114 tctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgtt 213  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425234 tctcaggaagaaggttttgccagctgtcatcgttcgtcagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgtt 8425333  T
Q  214 attgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaagt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||    
T  8425334 attgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggagtgtgctgatctttggcctaggattgcaaatgctgccaagt 8425433  T
Q  314 gccaatgccatagtatgagtgtggattctgtttcaagattgcaagtagtgtcgatgccattgtggcaattttaatacaagagagaatcttctttatgttt 413  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8425434 gccaatgccataatatgagtgtggattctgtttcaagattgcaagtagtgccgatgccattgtggcaattttaatacaagagagaatcatctttatgttt 8425533  T
Q  414 ttaggtctttcgagagattttgt 436  Q
    ||||||||||| |||||||||||    
T  8425534 ttaggtctttcaagagattttgt 8425556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 30234221 - 30234406
Alignment:
Q  14 acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctga 113  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||    
T  30234221 acatcatctccgtgaagggaatcaagggtaggttgaatcgtcttccttcagcttgtgctggtgacatggtgatggctactgtgaagaagggaaagcctga 30234320  T
Q  114 tctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaag 199  Q
    |||||||||||||||||||||||||| ||||||||| ||| | ||||| ||||||| |||||| ||||||||||||||||| ||||    
T  30234321 tctcaggaagaaggttttgccagctgtcatcgttcgtcagcgtaagccatggcgccgaaaggacggtgtcttcatgtactttgaag 30234406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 430 - 626
Target Start/End: Original strand, 8425578 - 8425775
Alignment:
Q  430 attttgtctttccttgaattatgtttaattggttggatttagaagatgattaattggtcgaatnnnnnnnnnnnnnn--tacatgatattagagtaaatg 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||                |||||||||||||||||||||    
T  8425578 attttgtctttccttgacttatgtttaattggttggatttagaagatgattaattggtcggataaaaaaaatattaaattacatgatattagagtaaatg 8425677  T
Q  528 agtaaattatcttttttatcaaatcatattgtgctatgtcctaattagattagattaacattcaaacaagatagaattgaatcaaagttcagtggttag 626  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425678 agtaaattatctttt-tatcaaatcatactgtgctatgtcctaattagattagattaacattcaaacaagatagaattgaatcaaagttcagtggttag 8425775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 240 - 436
Target Start/End: Original strand, 30235361 - 30235552
Alignment:
Q  240 aggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaagtgccaatgccatagtatgagtgtggat 339  Q
    ||||||||||||||| || ||||||| |||||  |||| |||||||||||||||||||||||||||||||       |||||||| ||||||| ||||||    
T  30235361 aggttctgctatcaccggtccaattgctaaggaatgtgctgatctttggcctaggattgcaagtgctgcc-------aatgccattgtatgagcgtggat 30235453  T
Q  340 tctgtttcaagattgcaagtagtgtcgatgccat--tgtggcaattttaatacaagagagaatcttctttatgtttttaggtctttcgagagattttgt 436  Q
    |||||||||||||||||||||||| |||||||||  |||| |||||||||||||||||| | |  ||||||||||||||||| || | |||||||||||    
T  30235454 tctgtttcaagattgcaagtagtgccgatgccattgtgtgacaattttaatacaagagatacttatctttatgtttttaggttttgcaagagattttgt 30235552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 30235004 - 30235049
Alignment:
Q  198 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30235004 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 30235049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 392
Target Start/End: Original strand, 1530477 - 1530854
Alignment:
Q  14 acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgat----ggctactatgaagaagggaaaac 109  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||| ||||    
T  1530477 acatcatctccgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaaggggaaac 1530576  T
Q  110 ctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctgg 209  Q
    ||||||||||||||||||||||||||| || ||||||||| ||| | ||||||||||||| ||||||| ||||||||||||||||| |||||||||  ||    
T  1530577 ctgatctcaggaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaaggatcgtgtcttcatgtacttcaaagataatgacgg 1530676  T
Q  210 tgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgcc 309  Q
      |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| | ||||| ||| |||||||||| ||||||||||||        
T  1530677 cattattgtgaatcctaagggagaaatgaaagattatgctatcactggaccaattggtaacgagtgtgctgagctttggcctatgattgcaagtgc---- 1530772  T
Q  310 aagtgccaatgccatagtatgagtgtggattctgtttcaagattgcaagtagtgtcgatgcca--ttgtggcaattttaatacaa 392  Q
       |||||||||||| ||||||||||||||| ||||||||||||||| ||||||  |||||||  |||||| |||||||||||||    
T  1530773 ---tgccaatgccattgtatgagtgtggattatgtttcaagattgcaggtagtgctgatgccattttgtggaaattttaatacaa 1530854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 306
Target Start/End: Complemental strand, 26797915 - 26797819
Alignment:
Q  209 gtgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgct 306  Q
    |||||||||| ||||| |||| |||||||||||| |||||||| | ||| |||||||| |||| ||||| |||| | ||| |||||||||||||||||    
T  26797915 gtgttattgttaatccaaagg-agaaatgaaagggtctgctattagtggtccaattgggaaggagtgtgctgatttatggtctaggattgcaagtgct 26797819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 392
Target Start/End: Complemental strand, 22476237 - 22475860
Alignment:
Q  14 acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgat----ggctactatgaagaagggaaaac 109  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||||||||    
T  22476237 acatcatctctgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaaaac 22476138  T
Q  110 ctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctgg 209  Q
    ||||||||| ||||||||||||||||| || ||||||||| ||| | ||||||||||||| ||| ||| ||||||||||||||||| |||||||||| ||    
T  22476137 ctgatctcatgaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgccaaaatgattgtgtcttcatgtacttcaaagataatgccgg 22476038  T
Q  210 tgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgcc 309  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| ||| |||||||||| ||||||||||||||      
T  22476037 cgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggcaacgagtgtgctgagctttggcctatgattgcaagtgctg-- 22475940  T
Q  310 aagtgccaatgccatagtatgagtgtggattctgtttcaagattgcaagtagtgtcgatgcca--ttgtggcaattttaatacaa 392  Q
         ||||| |||| ||||||||||||||| ||||||||||||||| ||||||  |||||||  || ||| |||||||||||||    
T  22475939 -----ccaataccattgtatgagtgtggattatgtttcaagattgcaggtagtgctgatgccattttttggaaattttaatacaa 22475860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 157 - 436
Target Start/End: Original strand, 26849095 - 26849358
Alignment:
Q  157 aagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatgaaaggttctgctatcactg 256  Q
    |||||||| |||| ||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||           ||||||||    
T  26849095 aagccttgacgccaaaaggattgtgtcttcatgtacttcgaagataatgccggcgttattgtgaatcctaagggagaaatg-----------tatcactg 26849183  T
Q  257 gaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaagtgccaatgccatagtatgagtgtggattctgtttcaagattgca 356  Q
    ||||||||||||| |  |||| ||| |||||||||| ||||||||||||||||       |||||||| ||||||||||||||| |||||||||||||||    
T  26849184 gaccaattggtaatgaatgtgctgagctttggcctatgattgcaagtgctgcc-------aatgccattgtatgagtgtggattatgtttcaagattgca 26849276  T
Q  357 agtagtgtcgatgccatt--gtggcaattttaatacaagagagaatcttctttatgtttttaggtctttcgagagattttgt 436  Q
     ||||||  |||||||||  |||| ||||||||| |||| || | | ||||||||||||||||||||| | |||||||||||    
T  26849277 ggtagtgctgatgccatttagtggaaattttaatccaagcgaaacttttctttatgtttttaggtcttgcaagagattttgt 26849358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 26842255 - 26842378
Alignment:
Q  14 acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatgg----tgatggctactatgaagaagggaaaac 109  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||||||| ||    
T  26842255 acatcatctccgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaatac 26842354  T
Q  110 ctgatctcaggaagaaggttttgc 133  Q
    ||||||||||||||||||||||||    
T  26842355 ctgatctcaggaagaaggttttgc 26842378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 279 - 392
Target Start/End: Original strand, 15425483 - 15425591
Alignment:
Q  279 tgatctttggcctaggattgcaagtgctgccaagtgccaatgccatagtatgagtgtggattctgtttcaagattgcaagtagtgtcgatgcc--attgt 376  Q
    |||| ||||||||||||||||||||||||||       |||||||| |||||||||| |||||||||||||||| |||||||||  |||||||   ||||    
T  15425483 tgatatttggcctaggattgcaagtgctgcc-------aatgccattgtatgagtgttgattctgtttcaagatcgcaagtagttccgatgcccttttgt 15425575  T
Q  377 ggcaattttaatacaa 392  Q
    |||| |||||||||||    
T  15425576 ggcagttttaatacaa 15425591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 487
Target Start/End: Original strand, 26849420 - 26849449
Alignment:
Q  458 ttggttggatttagaagatgattaattggt 487  Q
    ||||||||||||||||||||||||||||||    
T  26849420 ttggttggatttagaagatgattaattggt 26849449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 8e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 240 - 393
Target Start/End: Complemental strand, 5690166 - 5690016
Alignment:
Q  240 aggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaagtgccaatgccatagtatgagtgtggat 339  Q
    |||||| |||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||       |||||||||| |||||||||| |||    
T  5690166 aggttccgctatcacaggaccaattggtaaggagtgtgctgatctttggcctaggattgcaagtgctg-------ccaatgccattgtatgagtgttgat 5690074  T
Q  340 tctgtttcaag--attgcaagtagtgtcgatgcc--attgtggcaattttaatacaag 393  Q
    |||||||||||  ||||||||||||   ||||||   |||||||| ||||||||||||    
T  5690073 tctgtttcaagatattgcaagtagttctgatgcccttttgtggcagttttaatacaag 5690016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 262 - 393
Target Start/End: Original strand, 25154144 - 25154270
Alignment:
Q  262 attggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaagtgccaatgccatagtatgagtgtggattctgtttcaagattgcaagtag 361  Q
    |||| ||||| || || |||||||||||||||||||||||||||||||       |||||||| | |||||||| |||||||||||||||||||||||||    
T  25154144 attgataaggagtatgctgatctttggcctaggattgcaagtgctgcc-------aatgccattgcatgagtgttgattctgtttcaagattgcaagtag 25154236  T
Q  362 tgtcgatgcc--attgtggcaattttaatacaag 393  Q
    |  |||||||   |||||||| ||||||||||||    
T  25154237 ttccgatgcccttttgtggcagttttaatacaag 25154270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 25153751 - 25153794
Alignment:
Q  198 agataatgctggtgttattgtgaatcctaagggagaaatgaaag 241  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||    
T  25153751 agataattctggtgttattgttaatcctaagggagaaatgaaag 25153794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 240 - 393
Target Start/End: Original strand, 29759042 - 29759190
Alignment:
Q  240 aggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgccaagtgccaatgccatagtatgagtgtggat 339  Q
    |||||| | |||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||       |||||||| ||| |||||||||| |||    
T  29759042 aggttccgttatcacaggaccaattggaaaggagtgtgctgatctttggcctaggattgcaagtgc-------tgccaatgtcattgtatgagtgttgat 29759134  T
Q  340 tctgtttcaagattgcaagtagtgtcgatgcc--attgtggcaattttaatacaag 393  Q
    |||||||||||||||||||||||  | |||||   |||||||| ||||||||||||    
T  29759135 tctgtttcaagattgcaagtagttccaatgcccttttgtggcagttttaatacaag 29759190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 29758696 - 29758741
Alignment:
Q  198 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29758696 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 29758741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 58 - 199
Target Start/End: Complemental strand, 39327952 - 39327811
Alignment:
Q  58 ccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgca 157  Q
    ||||||||||| | |||||||||||||||||| ||  ||||||||||||| ||||||||| | ||||||||  | || || | ||||||||| ||| | |    
T  39327952 ccttcagcttgcgctggtgacatggtgatggccaccgtgaagaagggaaagcctgatctccgtaagaaggtgcttcctgccgtcatcgttcgtcagcgta 39327853  T
Q  158 agccttggcgcccaaaggatggtgtcttcatgtacttcgaag 199  Q
    | || ||||||| |||||| ||||| ||||||||||||||||    
T  39327852 aaccatggcgccgaaaggacggtgttttcatgtacttcgaag 39327811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 39327356 - 39327292
Alignment:
Q  244 tctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgc 308  Q
    |||||||| ||||| |||||||  |||| ||||| |||||| |||||||||||||||||||||||    
T  39327356 tctgctattactggtccaattgcgaaggagtgtgctgatctatggcctaggattgcaagtgctgc 39327292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 39327713 - 39327668
Alignment:
Q  198 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 243  Q
    ||||||||||||||||||||| ||||| || |||||||||||||||    
T  39327713 agataatgctggtgttattgttaatcccaaaggagaaatgaaaggt 39327668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 39718826 - 39718781
Alignment:
Q  198 agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt 243  Q
    ||||||||||||||||||||| ||||| || |||||||| ||||||    
T  39718826 agataatgctggtgttattgttaatcccaaaggagaaataaaaggt 39718781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 308
Target Start/End: Complemental strand, 8396817 - 8396719
Alignment:
Q  209 gtgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttggcctaggattgcaagtgctgc 308  Q
    |||||||||| ||||| |||| |||||||||||| ||| |||| ||||| | |||||| |||| ||||| |||| | ||| |||||||||||||||||||    
T  8396817 gtgttattgttaatccaaagg-agaaatgaaagggtctactattactggtcgaattgggaaggagtgtgctgatttatggtctaggattgcaagtgctgc 8396719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University