View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7723_low_11 (Length: 639)
Name: NF7723_low_11
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 599
Target Start/End: Complemental strand, 41359864 - 41359299
Alignment:
| Q |
17 |
catcattcataggttctaagacacacttgatatttttgaatggtataatactcctacactcctaaatatacacaaaaattcaaatgtatttgttcgaaan |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41359864 |
catcattcataggttctaagacacacttgatatttttgaatggtataatactcctacacttctaaatatacacaaaaattcaaatgtatttgttcgaaat |
41359765 |
T |
|
| Q |
117 |
nnnnnnnnnnnatttatatttcagatcaaagagaatacatctgattgaaaatgattctctagactaacttgtgttggtcagaaagttcgagaagtttaac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41359764 |
ttgacttttt-atttatatttcagatcaaagagaatacatctcatggaaaatgattctctagactaacttgtgttggtcggaaagttcgagaagtttaac |
41359666 |
T |
|
| Q |
217 |
caaaaagtataccaccatcagaaatcaaacacgggtatgagccgagcctgtccctcaaaatggaaggcctagcacctagccttatgattgttgagcgcat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41359665 |
caaaaagtataccaccatcagaaatcaaacacgggtatgagccgagcctgtccctcaaaatggaaggcctagcacctagccttatgattgttgagcgcat |
41359566 |
T |
|
| Q |
317 |
ggtttaaaattgtggtcgctgttacattgtggtctttcatattgcaagaaaatacagtcgatattgtggttacaatggagtcgctggaaaattcaaaatt |
416 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
41359565 |
ggtttaaaattgtggtcgctgtta---------------tattgcaagaaaatacggttgatattgtggttacaatggagccgc-ggaaaattcaaaatt |
41359482 |
T |
|
| Q |
417 |
attcaattgcaaacaacaatttaaaaccatgattgagtgcctatattaatgagaaagtattatgaacattgtctcaaatacaattatttatgtttataaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41359481 |
attcaattgcaaacaacaatttaaaaccatgattgagtgcctatattattgagaaagtattatgaacattgtctcaaatacaattatttatgtttataaa |
41359382 |
T |
|
| Q |
517 |
cactgctcatgcaaaacagactctgaccatttagtacctcgacaaaatgattctatttttctttatagtcaacagaggtaaat |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41359381 |
cactgctcatgcaaaacagactctgaccatttagtacctcgacaaaatgattctatttttctttatagtcaacagaggtaaat |
41359299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University