View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_13 (Length: 588)
Name: NF7723_low_13
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 192 - 569
Target Start/End: Original strand, 5174657 - 5175038
Alignment:
| Q |
192 |
catatgtaaaatgaacatttatctaactcatgcatg----ttgcgtatgagaaaaaatacttgtatcatttgtacagtctcaattccaatattctctggt |
287 |
Q |
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| T |
5174657 |
catatttaaaatgaacatttatctaactcatgcatgcatgttgcgtatgagaaaaaatacttgtatcatttgtacagtctcaattccaatattctctggt |
5174756 |
T |
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| Q |
288 |
ttctcaga-tctttgtttcttatgttaaaaaacacaaatcataa-tctgcatgaatccggcagagtag---tgatggtaggagaaacatagccataggag |
382 |
Q |
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| T |
5174757 |
ttctcagaatctttgtttcttatgttaaaaaacacaaatcataaatctgcatgaatccggcagagtagatttgatggtaggagaaacatagccataggag |
5174856 |
T |
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| Q |
383 |
ttaaaaatatatacttaaatccctccccttgtcttactctaaacattaccttaggcaacacagtagtaatcattattattgacaataaaaatggcaataa |
482 |
Q |
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| T |
5174857 |
ttaaaaatatatacttaaatccctccccttgtcttactctaaacattaccttaggcaacacagtagtaatcattattattgacaataaaaatggcaataa |
5174956 |
T |
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| Q |
483 |
tgagttaaaaacaaaaagataatagatgtagtcactagcagttagtaaatttcaatagtccaagctaagcaaaaaatgaccttagac |
569 |
Q |
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| T |
5174957 |
tgagttaaaaacaaaaagataatagatgtagtcactagcagttagtaaatttcaatagtcc-----aagcaaaaaatgaccttagac |
5175038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 5174604 - 5174650
Alignment:
| Q |
56 |
agataagatatgttgctgttaataattggagcaagtagacaataata |
102 |
Q |
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| T |
5174604 |
agataagatatgttgctgttaataattggagcaagtagacaataata |
5174650 |
T |
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