View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7723_low_14 (Length: 583)
Name: NF7723_low_14
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-138; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 263 - 564
Target Start/End: Original strand, 7321790 - 7322091
Alignment:
| Q |
263 |
acctcttatgctacttctgtcaatgatttctgtgtggcagacttacagcttccaaacaccccttctggttatccatgcaagtcagaaacaaatgtaacag |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
7321790 |
acctcttatgctacttctgtcaatgatttctgtgtggcagatttacagcttccaaacactccttcaggctatccatgcaagtcagaaacaaatgtaacag |
7321889 |
T |
|
| Q |
363 |
cagatgattttgtgttctctggctttgtacctggaagcacaatattagacccttttaatgttacattaaccactgcatttgtcactagtttaccaggtct |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
7321890 |
cagatgattttgtgttctctggctttgtacccggaagcacaatattagacccttttaatgttacattaaccactgcttttgttactagtttaccaggtct |
7321989 |
T |
|
| Q |
463 |
taatggacttggtatctctgcagcaaggggagactttgatataaatggaaatgttccaatgcactttcatcctgatgcaactgaattgcttatcatagtt |
562 |
Q |
| |
|
|||| |||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7321990 |
taatcgacttggtttctctgcagcaaagggagactttggtataaatggaactgttccaatgcactttcatcctgatgcgactgaattgcttatcatagtt |
7322089 |
T |
|
| Q |
563 |
ga |
564 |
Q |
| |
|
|| |
|
|
| T |
7322090 |
ga |
7322091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 130 - 562
Target Start/End: Original strand, 7319336 - 7319766
Alignment:
| Q |
130 |
tcaatgtatctttcatttccattaacactataaatggcaaaccta-tccaatatattctcttatcccaaatc-aaattcaaaagatgaggatcattcaca |
227 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||||||||||||| | || ||||||||||||| ||||||| || || |||||||||||||||| ||| |
|
|
| T |
7319336 |
tcaatgtatctatcatttc-attgacactataaatggcaaaccaacccccttatattctcttattccaaatcgaattttgaaagatgaggatcatttaca |
7319434 |
T |
|
| Q |
228 |
ttattcttttctattttactcttccctcatcatatacctcttatgctacttctgtcaatgatttctgtgtggcagacttacagcttccaaacaccccttc |
327 |
Q |
| |
|
||| ||||||||||||| |||||| || ||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
7319435 |
ttactcttttctatttttctcttctcttatcatatgcctcttatgctacttcagtcaatgatttctgtgttgcagacttacagcttccaaataccccttc |
7319534 |
T |
|
| Q |
328 |
tggttatccatgcaagtcagaaacaaatgtaacagcagatgattttgtgttctctggctttgtacctggaagcacaatattagacccttttaatgttaca |
427 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||| | ||||| | |||||||||| ||| ||||| |||||||||||||||||| | |
|
|
| T |
7319535 |
aggctatccatgcaagtcagaaacaaatgtaacagtggatgattttttattctccgactttgtacctagaaacacaa---tagacccttttaatgttaga |
7319631 |
T |
|
| Q |
428 |
ttaaccactgcatttgtcactagtttaccaggtcttaatggacttggtatctctgcagcaaggggagactttgatataaatggaaatgttccaatgcact |
527 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||| | |
|
|
| T |
7319632 |
ttaaccactgcattcgtcactagtttaccaggtcttaatggacttggtatctccgcagcaaggggggactttggcttaaatggaactgttccaatgcatt |
7319731 |
T |
|
| Q |
528 |
ttcatcctgatgcaactgaattgcttatcatagtt |
562 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
7319732 |
ttcatcctgatgcaaatgaattgcttatcgtagtt |
7319766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 387
Target Start/End: Original strand, 7324579 - 7324681
Alignment:
| Q |
285 |
atgatttctgtgtggcagacttacagcttccaaacaccccttctggttatccatgcaagtcagaaacaaatgtaacagcagatgattttgtgttctctgg |
384 |
Q |
| |
|
||||||||||||| ||||||||| | ||||| |||||||||| || |||||||||||||| |||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
7324579 |
atgatttctgtgtagcagacttatcgtttccagacaccccttcgggctatccatgcaagtcggaaaacaatgtaacagctgatgattttgtattctctgg |
7324678 |
T |
|
| Q |
385 |
ctt |
387 |
Q |
| |
|
||| |
|
|
| T |
7324679 |
ctt |
7324681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 549
Target Start/End: Complemental strand, 7318405 - 7318358
Alignment:
| Q |
502 |
tataaatggaaatgttccaatgcactttcatcctgatgcaactgaatt |
549 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
7318405 |
tataaatggaagtgtaccaatgcacactcatcctgatgcaactgaatt |
7318358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 7324750 - 7324786
Alignment:
| Q |
453 |
taccaggtcttaatggacttggtatctctgcagcaag |
489 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
7324750 |
taccaggtctcaatggacttggtatctctgtagcaag |
7324786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 221 - 556
Target Start/End: Complemental strand, 2345568 - 2345248
Alignment:
| Q |
221 |
attcacattattcttttctattttactcttccctcatcatatacctcttatgctacttctgtcaatgatttctgtgtggcagacttacagcttccaaaca |
320 |
Q |
| |
|
||||||| ||||||||||| |||| ||||| |||||||||||||||||||||| ||||||| ||||| |||||||||| || ||||||| |
|
|
| T |
2345568 |
attcacactattcttttcttttttgttcttctctcatcatatacctcttatgctg---------atgatttatgtgtagcagacttactactcccaaaca |
2345478 |
T |
|
| Q |
321 |
ccccttctggttatccatgcaagtcagaaacaaatgtaacagcagatgattttgtgttctctggctttgtacctggaagcacaatattagacccttttaa |
420 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| || |||||||||| |
|
|
| T |
2345477 |
ccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctctggcttagtacctggaagcacaa---taaacccttttaa |
2345381 |
T |
|
| Q |
421 |
tgttacattaaccactgcatttgtcactagtttaccaggtcttaatggacttggtatctctgcagcaaggggagactttgatataaatggaaatgttcca |
520 |
Q |
| |
|
| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||| ||||||| |
|
|
| T |
2345380 |
ttttgcaataacatctgcatttgtcactagtttaccaggtcttaatggacttggtatctctgcagcaagagcagattttggtataaatggaagtgttcca |
2345281 |
T |
|
| Q |
521 |
atgcactttcatcctgatgcaactgaattgcttatc |
556 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||| |
|
|
| T |
2345280 |
gtgcacactca---tgatgcaactgaattacttatc |
2345248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 452 - 558
Target Start/End: Original strand, 6521468 - 6521574
Alignment:
| Q |
452 |
ttaccaggtcttaatggacttggtatctctgcagcaaggggagactttgatataaatggaaatgttccaatgcactttcatcctgatgcaactgaattgc |
551 |
Q |
| |
|
|||||| |||| |||||||||| ||| ||||||||||| | |||| ||| | ||||||| |||||||||||| ||||||||||||||||||||| | |
|
|
| T |
6521468 |
ttaccaagtctcaatggacttgatatatctgcagcaagagtagacattggtccaaatggatctgttccaatgcatactcatcctgatgcaactgaattac |
6521567 |
T |
|
| Q |
552 |
ttatcat |
558 |
Q |
| |
|
| ||||| |
|
|
| T |
6521568 |
taatcat |
6521574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 398
Target Start/End: Original strand, 32984281 - 32984314
Alignment:
| Q |
365 |
gatgattttgtgttctctggctttgtacctggaa |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32984281 |
gatgattttgtgttctctggctttgtacctggaa |
32984314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University