View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_18 (Length: 504)
Name: NF7723_low_18
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 384
Target Start/End: Original strand, 13271077 - 13271451
Alignment:
| Q |
10 |
gatggacatcagtatattcgctgaacatctcaaatcctcccatcatcatatagttgccaaattgttccaaaacatttccaccttcacttggtgtagcaag |
109 |
Q |
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| T |
13271077 |
gatggacatcagtatattcactcgacatctcaaatgctcccatcatcatatagttgccaaattgttccaaaacaattccactttcagttggtgtagcaag |
13271176 |
T |
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| Q |
110 |
atgcaattcaagatattcttcaatttgctgcttattaacacttccaacattatcacttctttcaggtggcgatttcattttgtacccttctccacctcga |
209 |
Q |
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| T |
13271177 |
attcaattcaagatattcttcaatttgctgcttattaacacttccaacattatcacttctttcaggtggcgatttcattttgtactcttctccacctcga |
13271276 |
T |
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| Q |
210 |
cccatcttttgcgaagatcttgacttcacatcactgccatcaacatgtacaacagcagtgcctaaaatataaaggtttgagatgacatcataaattaata |
309 |
Q |
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| T |
13271277 |
cccgtcttttgcgaagatcttgacttcacatcactgccatcaacatgtccaacagcagtgcctaaaatataaaggtttgagatgacatcataaaataata |
13271376 |
T |
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| Q |
310 |
aaccaatttggaacaaaatcaactataggattgtttatgtcaaggtgtaaaagataacaagtaaaatgatgcgta |
384 |
Q |
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| T |
13271377 |
aaccaatttggaacaaaatcaactataggattgtttatgtcaaggtgtaaaagataacaagtaaaatcatgcgta |
13271451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 382 - 487
Target Start/End: Original strand, 13271546 - 13271651
Alignment:
| Q |
382 |
gtacattaaaaactgtggtaacattcatatacctgactcaaccatgtgatggatattaagatcagacatggcttcacttagttgacaagtagcttgaaat |
481 |
Q |
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| T |
13271546 |
gtacattacaaactgtggtaacattcatatacctgactcaaccatgtgatggatattaagatcagacatggcttcacttagttgacaagtagcttgaaat |
13271645 |
T |
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| Q |
482 |
tgattc |
487 |
Q |
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|||||| |
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| T |
13271646 |
tgattc |
13271651 |
T |
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