View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7723_low_19 (Length: 492)

Name: NF7723_low_19
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7723_low_19
NF7723_low_19
[»] chr2 (3 HSPs)
chr2 (1-303)||(27162226-27162528)
chr2 (6-151)||(22911124-22911269)
chr2 (421-465)||(27162064-27162108)
[»] chr5 (2 HSPs)
chr5 (1-303)||(20955660-20955962)
chr5 (421-465)||(20956080-20956124)
[»] chr1 (4 HSPs)
chr1 (1-303)||(1976990-1977292)
chr1 (1-303)||(1984356-1984658)
chr1 (421-467)||(1984189-1984235)
chr1 (421-465)||(1976825-1976869)
[»] scaffold0764 (2 HSPs)
scaffold0764 (3-300)||(3108-3405)
scaffold0764 (428-478)||(2936-2986)
[»] scaffold0313 (4 HSPs)
scaffold0313 (3-300)||(3210-3507)
scaffold0313 (3-300)||(17367-17664)
scaffold0313 (428-478)||(3629-3679)
scaffold0313 (428-478)||(17786-17836)
[»] scaffold1531 (1 HSPs)
scaffold1531 (1-300)||(973-1272)
[»] scaffold0059 (1 HSPs)
scaffold0059 (6-151)||(43015-43159)


Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 27162528 - 27162226
Alignment:
Q  1 ctctagctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27162528 ctctagctcaactccacataaccacctccagcatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaa 27162429  T
Q  101 gccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27162428 gccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaagaagagtctgatgatgaa 27162329  T
Q  201 atggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaag 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27162328 atggctgattccccaccaaaggatggtgaaccctctgatataaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaag 27162229  T
Q  301 atc 303  Q
    |||    
T  27162228 atc 27162226  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 22911269 - 22911124
Alignment:
Q  6 gctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagccaa 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| ||||||| || |||||||||||||||| |||    
T  22911269 gctcaacttcacataaccacctccaacatgcctactcctgtgtcctcacaaacaactagctatgtcaagagacacttagctcagaatgttaagaagacaa 22911170  T
Q  106 gtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattca 151  Q
    |||||||||| || || || ||||||||||| || |||||||||||    
T  22911169 gtaagaagaggaaactagagaaagtcaggaacctatcaagcattca 22911124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 421 - 465
Target Start/End: Complemental strand, 27162108 - 27162064
Alignment:
Q  421 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27162108 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 27162064  T

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Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 20955660 - 20955962
Alignment:
Q  1 ctctagctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20955660 ctctagctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaa 20955759  T
Q  101 gccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaa 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  20955760 gccaagtaagaagagaaagcttgagaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactcttctgaaaaagaagagtctgatgatgaa 20955859  T
Q  201 atggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaag 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20955860 atggctgattccccaccaaaggatggtgaatcctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaag 20955959  T
Q  301 atc 303  Q
    |||    
T  20955960 atc 20955962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 421 - 465
Target Start/End: Original strand, 20956080 - 20956124
Alignment:
Q  421 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20956080 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 20956124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 1977292 - 1976990
Alignment:
Q  1 ctctagctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1977292 ctctagctcaacttcacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaa 1977193  T
Q  101 gccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaa 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1977192 gccaagtaagaagagaaagcttgaaaaagtcagaaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaa 1977093  T
Q  201 atggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||    
T  1977092 atggctgattccccaccaaaggatggtgaaccctctgatgtaaatctttttcaagatattgctgaaaatgcaaaggaaatcctgcaacaaaatgcagaag 1976993  T
Q  301 atc 303  Q
    |||    
T  1976992 atc 1976990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 1984658 - 1984356
Alignment:
Q  1 ctctagctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1984658 ctctagctcaacttcacataaccacctccaacatgcctactcctgtgtcctctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaa 1984559  T
Q  101 gccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaa 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1984558 gccaagtaagaagagaaagcttgaaaaagtcagaaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaa 1984459  T
Q  201 atggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||    
T  1984458 atggctgattccccaccaaaggatggtgaaccctctgatgtaaatctttttcaagatattgctgaaaatgcaaaggaaatcctgcaacaaaatgcagaag 1984359  T
Q  301 atc 303  Q
    |||    
T  1984358 atc 1984356  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 421 - 467
Target Start/End: Complemental strand, 1984235 - 1984189
Alignment:
Q  421 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactgat 467  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  1984235 ttgctgcaatttctgaagaggaacttcagaatgttgactcaactgat 1984189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 465
Target Start/End: Complemental strand, 1976869 - 1976825
Alignment:
Q  421 ttgctgcaatctctgaagaggaacttcagaatgttgactcaactg 465  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  1976869 ttgctgcaatttctgaagaggaacttcagaatgttgactcaactg 1976825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 3 - 300
Target Start/End: Complemental strand, 3405 - 3108
Alignment:
Q  3 ctagctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagc 102  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||||| |||||||||||||||||    
T  3405 ctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacactcagctcagaatgttaagaagc 3306  T
Q  103 caagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaat 202  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || || |  |||||||| || ||    
T  3305 caagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaaagaggcatctgatgaagagat 3206  T
Q  203 ggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaag 300  Q
     |||||||||||||||||||| | ||||||| ||| ||| ||||| ||||||||||||||||||  |||||| |||||||||||  || |||||||||    
T  3205 agctgattccccaccaaaggaggatgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatccttcaagaagatgcagaag 3108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 478
Target Start/End: Complemental strand, 2986 - 2936
Alignment:
Q  428 aatctctgaagaggaacttcagaatgttgactcaactgatgttactgatgt 478  Q
    |||||||||| |||| |||||||| ||||||||||||| |||| |||||||    
T  2986 aatctctgaaaaggaccttcagaaagttgactcaactggtgttgctgatgt 2936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 178; Significance: 8e-96; HSPs: 4)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 3 - 300
Target Start/End: Original strand, 3210 - 3507
Alignment:
Q  3 ctagctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagc 102  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||||| |||||||||||||||||    
T  3210 ctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacactcagctcagaatgttaagaagc 3309  T
Q  103 caagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaat 202  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || || |  |||||||| || ||    
T  3310 caagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaaagaggcatctgatgaagagat 3409  T
Q  203 ggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaag 300  Q
     |||||||||||||||||||| | ||||||| ||| ||| ||||| ||||||||||||||||||  |||||| |||||||||||  || |||||||||    
T  3410 agctgattccccaccaaaggaggatgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatccttcaagaagatgcagaag 3507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 3 - 300
Target Start/End: Original strand, 17367 - 17664
Alignment:
Q  3 ctagctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagc 102  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||||| |||||||||||||||||    
T  17367 ctagctcaacttcacataaccacctccaacatgcctactccagtgtcttcacagacaaccagctctgtcaaaagacactcagctcagaatgttaagaagc 17466  T
Q  103 caagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaaat 202  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || || |  |||||||| || ||    
T  17467 caagtaagaagaggaagcttgaaaaagtcagaaatctttcaagcattcagagacaagaagaagaaaactctcctgacaaagaggcatctgatgaagagat 17566  T
Q  203 ggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaag 300  Q
     |||||||||||||||||||| | ||||||| ||| ||| ||||| ||||||||||||||||||  |||||| |||||||||||  || |||||||||    
T  17567 agctgattccccaccaaaggaggatgaacccactgctgttaatctcttccaagatattgctgaacgtgcaaaagaaatccttcaagaagatgcagaag 17664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 3629 - 3679
Alignment:
Q  428 aatctctgaagaggaacttcagaatgttgactcaactgatgttactgatgt 478  Q
    |||||||||| |||| |||||||| ||||||||||||| |||| |||||||    
T  3629 aatctctgaaaaggaccttcagaaagttgactcaactggtgttgctgatgt 3679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 17786 - 17836
Alignment:
Q  428 aatctctgaagaggaacttcagaatgttgactcaactgatgttactgatgt 478  Q
    |||||||||| |||| |||||||| ||||||||||||| |||| |||||||    
T  17786 aatctctgaaaaggaccttcagaaagttgactcaactggtgttgctgatgt 17836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1531 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: scaffold1531
Description:

Target: scaffold1531; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 973 - 1272
Alignment:
Q  1 ctctagctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaa 100  Q
    |||| ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||    
T  973 ctctcgctcaacttaacataaccacctccaacatgcctacccctgtgtcttctcaaacaactagctctttcaagagacactcagctcagaatgtcaagaa 1072  T
Q  101 gccaagtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattcaaagacaagaggaagaaaactctcctgaaaaggaagagtctgatgatgaa 200  Q
    | ||| ||||||||| || ||||| |||||||||||  | |||||| |||| ||| |  | ||  | ||||||||  |||| ||||  ||| |||||||     
T  1073 gtcaaataagaagaggaaacttgagaaagtcaggaacttatcaagcgttcagagagataaagagaagaactctccctaaaaagaagcatctaatgatgag 1172  T
Q  201 atggctgattccccaccaaaggatggtgaaccctctgatgtaaatcttttccaagatattgctgaaaatgcaaaggaaatccttcagcaaaatgcagaag 300  Q
    |||||||| || |||| |||||||||||||||| ||| ||| ||||| |||||||  |||||||||  |||||  ||||||||||| |||||||||||||    
T  1173 atggctgactctccactaaaggatggtgaacccactgctgttaatctcttccaaggaattgctgaacgtgcaagagaaatccttcaacaaaatgcagaag 1272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 43159 - 43015
Alignment:
Q  6 gctcaactccacataaccacctccaacatgcctactcctgtgtcttctcaaacaactagctctgtcaaaagacactcagttcagaatgttaagaagccaa 105  Q
    |||||||| |||||||||||| ||||||||||||||| ||| || |   || ||||| ||||| |||| ||||||||||  ||||| | |||||||| ||    
T  43159 gctcaacttcacataaccaccaccaacatgcctactcatgtatcctgagaagcaactggctctatcaagagacactcagaacagaaggataagaagctaa 43060  T
Q  106 gtaagaagagaaagcttgaaaaagtcaggaatctttcaagcattca 151  Q
    | ||||| || ||  ||| ||||||||| ||| |||||||||||||    
T  43059 ggaagaaaaggaaaattggaaaagtcagaaat-tttcaagcattca 43015  T

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