View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_20 (Length: 478)
Name: NF7723_low_20
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 15 - 462
Target Start/End: Complemental strand, 3017085 - 3016638
Alignment:
| Q |
15 |
catcacatccaagatccagcattaccacacataacctgacttttgcgactgtttcaaggattgaaatccttgtttcataccaacggcttgacatatcatg |
114 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017085 |
catcacattcaagatccagcattaccacacataacctgacttttgcaactgtttcaaggattgaaatccttgtttcataccaacggcttgacatatcatg |
3016986 |
T |
|
| Q |
115 |
tagattttcaaaagaagatacaattaatctcaagacctcctgnnnnnnnntgacaccatataactcaacagacataacttgttaagaacatgataataga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016985 |
tagattttcaaaagaagatacaattaatctcaagacctcctgaaagaaaatgacaccatataactcaacagacataacttgttaagaacatgataataga |
3016886 |
T |
|
| Q |
215 |
atagaattcaattaatgtacnnnnnnnnttatcaagcacaccttcatttggtgatcattgtaaggaccatcgggtgcagtgattcttgttaactcactca |
314 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3016885 |
atagaattcaattaatgtacaaaaaaaattatcaagcacaccttcatttggtgatcattgtaaggaccatcaggtgcagtgattcttgttaactcactca |
3016786 |
T |
|
| Q |
315 |
agcaggaggcaagggcaactttgacaccaacatctgaatgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgctttttgaatgga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016785 |
agcaggaggcaagggcaactttgacaccaacatctgaatgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgctttttgaatgga |
3016686 |
T |
|
| Q |
415 |
cttagaaggtgattgttcaacctttgataagctctttccaacttgctg |
462 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016685 |
cttagaaggtgattgttcaacctttgataagctctttccaacttgctg |
3016638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 15 - 443
Target Start/End: Complemental strand, 3032821 - 3032397
Alignment:
| Q |
15 |
catcacatccaagatccagcattaccacacataacctgacttttgcgactgtttcaaggattgaaatccttgtttcataccaacggcttgacatatcatg |
114 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||||||||||| |||||||| |||||| || |||| || ||||| ||||||||| ||||||| |
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|
| T |
3032821 |
catcgcattcaagatccagcattaccacacatgacctgacttttgcaactgtttcgaggattaaagtcctctttgagtaccatcggcttgacttatcatg |
3032722 |
T |
|
| Q |
115 |
tagattttcaaaagaagatacaattaatctcaagacctcctgnnnnnnnntgacaccatataactcaacagacataacttgttaagaacatgataataga |
214 |
Q |
| |
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|||||||||||| |||||||||||||| || ||||||||||| ||||| |||| ||||||||||| ||| |||||||| |||||||||||| |
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|
| T |
3032721 |
tagattttcaaatgaagatacaattaacctaaagacctcctgaaagaaaatgacaacataaaactcaacagatgtaatatgttaagagcatgataataga |
3032622 |
T |
|
| Q |
215 |
atagaattcaattaatgtacnnnnnnnnttatcaagcacaccttcatttggtgatcattgtaaggaccatcgggtgcagtgattcttgttaactcactca |
314 |
Q |
| |
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|| |||| | ||| | || | || || |||||||||||| ||||| |||||| |||| ||||||||||||||||||| |||||| | |
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| T |
3032621 |
attcaattaatttatagcacaaaa----tcattgtgcgcaccttcatttgaccatcatcataaggagcatcaggtgcagtgattcttgttatctcactga |
3032526 |
T |
|
| Q |
315 |
agcaggaggcaagggcaactttgacaccaacatctgaatgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgctttttgaatgga |
414 |
Q |
| |
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||||||||||||| || ||||||||| || ||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||| | || || |
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|
| T |
3032525 |
agcaggaggcaagagccactttgacatcagcatctgaatgctttataagtttatcagcaattaatgctttcaatgatggagacagtgcatttagcataga |
3032426 |
T |
|
| Q |
415 |
cttagaaggtgattgttcaacctttgata |
443 |
Q |
| |
|
| || |||||||||||||||| |||||| |
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|
| T |
3032425 |
ttcaggaggtgattgttcaacccttgata |
3032397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 48969900 - 48970027
Alignment:
| Q |
15 |
catcacatccaagatccagcattaccacacataacctgacttttgcgactgtttcaaggattgaaatccttgtttcataccaacggcttgacatatcatg |
114 |
Q |
| |
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||||||| |||| |||| ||||||||||||| | ||||| ||||| || ||||| |||| | |||| | |||||| | |||||| || ||||||| |
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| T |
48969900 |
catcacaatcaaggtccaacattaccacacatgatctgacctttgcaacagtttcgaggactattctcctattctcatacgatcggcttaacttatcatg |
48969999 |
T |
|
| Q |
115 |
tagattttcaaaagaagatacaattaat |
142 |
Q |
| |
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|||||||||||| ||||||||||||||| |
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|
| T |
48970000 |
tagattttcaaatgaagatacaattaat |
48970027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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