View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7723_low_22 (Length: 458)

Name: NF7723_low_22
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7723_low_22
NF7723_low_22
[»] chr1 (3 HSPs)
chr1 (220-441)||(42197830-42198055)
chr1 (411-441)||(42206893-42206923)
chr1 (411-441)||(42215761-42215791)
[»] chr6 (1 HSPs)
chr6 (16-220)||(380510-380714)
[»] chr7 (1 HSPs)
chr7 (16-220)||(6232262-6232467)
[»] chr4 (3 HSPs)
chr4 (16-87)||(55329205-55329275)
chr4 (16-71)||(18848109-18848163)
chr4 (39-71)||(42111003-42111035)
[»] chr2 (3 HSPs)
chr2 (230-340)||(12326624-12326734)
chr2 (226-321)||(12361402-12361497)
chr2 (236-287)||(12355539-12355590)
[»] scaffold0691 (1 HSPs)
scaffold0691 (39-71)||(1255-1287)
[»] chr8 (1 HSPs)
chr8 (20-68)||(42202748-42202795)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 220 - 441
Target Start/End: Original strand, 42197830 - 42198055
Alignment:
Q  220 ttcttgctctctctaagttcgtgaatagag----tttgtcataaaaatgttatagttttcctcattggtaaactttttgaaaaggataattatgcaacag 315  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  42197830 ttcttgctctctctaagttcgtgaatagagagagtttgtcataaaaatgttatagttttcctcattagtaaactttttgaaaaggataagtatgcaacag 42197929  T
Q  316 ccaaagtggacaagtattgaaggccgatccaatcgacggttaatcggttatagtcaatattccgttagcatcggctggtaacctcgctgcaacaggtttt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42197930 ccaaagtggacaagtattgaaggccgatccaatcgacggttaatcagttatagtcaatattccgttagcatcggctggtaacctcgctgcaacaggtttt 42198029  T
Q  416 atacctattgcaaccaatgctgttat 441  Q
    ||||||||||||||||||||||||||    
T  42198030 atacctattgcaaccaatgctgttat 42198055  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 441
Target Start/End: Original strand, 42206893 - 42206923
Alignment:
Q  411 gttttatacctattgcaaccaatgctgttat 441  Q
    |||||||||||||||||||||||||||||||    
T  42206893 gttttatacctattgcaaccaatgctgttat 42206923  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 441
Target Start/End: Original strand, 42215761 - 42215791
Alignment:
Q  411 gttttatacctattgcaaccaatgctgttat 441  Q
    |||||||||||||||||||||||||||||||    
T  42215761 gttttatacctattgcaaccaatgctgttat 42215791  T

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Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 380714 - 380510
Alignment:
Q  16 caaggaatgcttattgagataacgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgctgtagttctgctgcaccttttgggcttttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  380714 caaggaatgcttattgagataacgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgttgtagttctgctgcaccttttgggctattg 380615  T
Q  116 ttttctgctatgccggttttctgttgttgctgtttttctgttatagctgccggttcaggggtttagttttggtttgggtgcaggttggctgtggttatca 215  Q
    |||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  380614 ttttctgctatgccagttttctgttgttgctatttttctgttatagttgccggttcaggggtttagttttgttttgggtgcaggttggctgtggttatca 380515  T
Q  216 gcagt 220  Q
    |||||    
T  380514 gcagt 380510  T

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Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 6232262 - 6232467
Alignment:
Q  16 caaggaatgcttattgagataacgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgctgtagttctgctgcaccttttgggcttttg 115  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  6232262 caaggaatgcttattgagataatgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgctttagttctgctgcactttttgggcttttg 6232361  T
Q  116 ttttctgctatgccggttttctg-ttgttgctgtttttctgttatagctgccggttcaggggtttagttttggtttgggtgcaggttggctgtggttatc 214  Q
    |||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6232362 ttttctgctatgccagttttctgtttgttgcggtttttctggtatagctgccggttcaggggtttagttttggtttgggtgcaggttggctgtggttatc 6232461  T
Q  215 agcagt 220  Q
    ||||||    
T  6232462 agcagt 6232467  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 55329205 - 55329275
Alignment:
Q  16 caaggaatgcttattgagataacgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgctg 87  Q
    |||||||||||||||||||||  |||||||||||||||||||||||| |||||||  |||||||||||||||    
T  55329205 caaggaatgcttattgagatag-gtggggcagttttagaggtgtccgtgactttttcctgttgaggttgctg 55329275  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 18848109 - 18848163
Alignment:
Q  16 caaggaatgcttattgagataacgtggggcagttttagaggtgtccgggacttttg 71  Q
    |||||||||| ||||||||||   ||||| ||||||||||||||||||||||||||    
T  18848109 caaggaatgcctattgagatagt-tggggtagttttagaggtgtccgggacttttg 18848163  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 42111035 - 42111003
Alignment:
Q  39 gtggggcagttttagaggtgtccgggacttttg 71  Q
    |||||| ||||||||||||||||||||||||||    
T  42111035 gtggggtagttttagaggtgtccgggacttttg 42111003  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 340
Target Start/End: Original strand, 12326624 - 12326734
Alignment:
Q  230 ctctaagttcgtgaatagagtttgtcataaaaatgttatagttttcctcattggtaaactttttgaaaaggataattatgcaacagccaaagtggacaag 329  Q
    ||||||||||| ||||||| || ||||| |||||||||||| |||||||| | |||||||  |||||||| | ||| || ||||| || || | ||||||    
T  12326624 ctctaagttcgcgaatagaattcgtcatgaaaatgttatagctttcctcagtagtaaactccttgaaaagtacaatgatacaacaaccgaaatagacaag 12326723  T
Q  330 tattgaaggcc 340  Q
    |||||||||||    
T  12326724 tattgaaggcc 12326734  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 321
Target Start/End: Complemental strand, 12361497 - 12361402
Alignment:
Q  226 ctctctctaagttcgtgaatagagtttgtcataaaaatgttatagttttcctcattggtaaactttttgaaaaggataattatgcaacagccaaag 321  Q
    ||||| ||||||||| |||||||||||||||| ||| ||||||| ||||| || || ||||| || |||||||||||||  || ||||| ||||||    
T  12361497 ctctccctaagttcgcgaatagagtttgtcatgaaagtgttataattttcgtcgttagtaaatttcttgaaaaggataaggatacaacaaccaaag 12361402  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 12355590 - 12355539
Alignment:
Q  236 gttcgtgaatagagtttgtcataaaaatgttatagttttcctcattggtaaa 287  Q
    ||||||||||||||||| || | ||| ||||||||||||||||||| |||||    
T  12355590 gttcgtgaatagagtttttcgtgaaagtgttatagttttcctcattagtaaa 12355539  T

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Target: scaffold0691 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 1255 - 1287
Alignment:
Q  39 gtggggcagttttagaggtgtccgggacttttg 71  Q
    |||||| ||||||||||||||||||||||||||    
T  1255 gtggggtagttttagaggtgtccgggacttttg 1287  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 42202748 - 42202795
Alignment:
Q  20 gaatgcttattgagataacgtggggcagttttagaggtgtccgggactt 68  Q
    |||||||||||||||||   ||||||||||||||||||||| |||||||    
T  42202748 gaatgcttattgagataga-tggggcagttttagaggtgtctgggactt 42202795  T

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