View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_23 (Length: 450)
Name: NF7723_low_23
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 10 - 447
Target Start/End: Original strand, 21434540 - 21434977
Alignment:
| Q |
10 |
ggacatcaatatcagaaaagataattggtttcaagtcctaacatgaaaaccttgggaaataaaaatcctatagattagggatattttttatgttgaaaac |
109 |
Q |
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| T |
21434540 |
ggacatcaatatcagaaaagataattggtttcaagtcctaacatgaaaaccttgggaaataaaaatcatatagattagggatattttttatgttgaaaac |
21434639 |
T |
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| Q |
110 |
tgttgtctgaacaatacccaagtgctaccccctttgatgaatcaaaatgaagatgatcaagtaacgtgaaagggaaatttttgagataagagacaataac |
209 |
Q |
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| T |
21434640 |
tgttgtctgaacaatacccaagtgctaccccctttgatgaatcaaaatgaagatgatcaagtaacgtgaaagggaaatttttgagataagagacaataac |
21434739 |
T |
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| Q |
210 |
aagcaaaaatctaaagggttgctcctcaatttctataaggcaaattgtgatgcaaaccttcacatggaaggtcactggggtcttagtacagtgatattag |
309 |
Q |
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| T |
21434740 |
aagcaaaaatctaaagggttgctcctcaatttctataaggcaaattgtgatgcaaaccttcacatggaaggtcactggggtcttagtacagtgatattag |
21434839 |
T |
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| Q |
310 |
ggttgcaagtagaaatgtggttgctgcggaaaattggaaaaccaaaggaacggaagatgcaacaatggcagaagctcaagtattgaatcgctcgtttgat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21434840 |
ggttgcaagtagaaatgtggttgctgcggaaaattggaaaaccaaaggaacggaagatgcaacaatggcagaagctcaagtattgaatcgctcgtttgat |
21434939 |
T |
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| Q |
410 |
cttgcgcatgccttttgcttcaaatctatattattcga |
447 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |
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| T |
21434940 |
cttgcgcatgccttttgcttcaaatctataatattcga |
21434977 |
T |
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