View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_25 (Length: 424)
Name: NF7723_low_25
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_25 |
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| [»] scaffold0163 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 87 - 349
Target Start/End: Original strand, 7725183 - 7725445
Alignment:
| Q |
87 |
cttgacgggatcaccaaaacaatagctatctatctatgtatagtccagccctatcatatcagagatagaaatatactattacactgtatgaaaccaaaac |
186 |
Q |
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| T |
7725183 |
cttgacgggatcaccaaaacaatagctatctatctatgtatagtccagccctatcatatcagagatagaaatatactattacactgtatgaaaccaaaac |
7725282 |
T |
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| Q |
187 |
atcagcaagttggagtcaatcctatctcatcaaattatacaatacttttgaagatttatggttgtctctcatgtgatatctaacacatcaaagtaacaag |
286 |
Q |
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| T |
7725283 |
atcagcaagttggagtcaatcctatttcatcaaattatacaatacttttgaagatttatggttgtctctcatgtgatatctaacacatcaaagtaacaag |
7725382 |
T |
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| Q |
287 |
actcaacatgactaatatcaaagaaatcaaaactgcatgtgtagtgtcttcatagagtaagaa |
349 |
Q |
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| T |
7725383 |
actcaacatgactaatatcaaagaaatcaaaactgcatgtgtagtgtcttcatagagtaagaa |
7725445 |
T |
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Target: scaffold0163 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 736 - 775
Alignment:
| Q |
248 |
ttgtctctcatgtgatatctaacacatcaaagtaacaaga |
287 |
Q |
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| T |
736 |
ttgtctttcatgtgatatctaacacatcaaagtaacaaga |
775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 15098119 - 15098158
Alignment:
| Q |
248 |
ttgtctctcatgtgatatctaacacatcaaagtaacaaga |
287 |
Q |
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| T |
15098119 |
ttgtctttcatgtgatatctaacacatcaaagtaacaaga |
15098158 |
T |
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