View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7723_low_26 (Length: 423)
Name: NF7723_low_26
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7723_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 1057849 - 1058253
Alignment:
| Q |
1 |
tactaactagaaagatctatctcctctatacttcaactcaattgcagttaccctcaagtttagtgtttcttgcaaataaggtagctcctataaatcaaca |
100 |
Q |
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| T |
1057849 |
tactaactagaaagatctatctcctctatacttcaactcaattgcagttaccctcaagtttagtgtttcttgcaaataaggtagctcctataaatcaaca |
1057948 |
T |
|
| Q |
101 |
aaacttgaatcaaagaaaaagtttgtctctccatgcaagtaagcaaagtcatcatcaatcaaacaaacttttgcacatagcttttattgtttgaaaaatt |
200 |
Q |
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| T |
1057949 |
aaacttgaatcaaagaaaaagtttgtctctccatgcaagtaagcaaagtcatcatcaatcaaacaaacttttgcacatagcttttattgtttgaaaaatt |
1058048 |
T |
|
| Q |
201 |
tataaaaccctatatttaattttcttaaccctttatatattcttttaaattttgacaattttgaagctcgttcataaaacaacaactatttgtacatcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1058049 |
tataaaaccctatatttaattttcttaaccctttatatattcttttaaattttgacaattttaaagctcgttcataaaacaacaactatttgtacatcat |
1058148 |
T |
|
| Q |
301 |
gacactttttgtgtgttattccagaaggacaaagaagttgttagtaaagaaaggaaggatatggaaatggaaggaaatcgtgagaaagaggaaaccctac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1058149 |
gacactttttgtgtgttattccagaaggacaaagaagttgttagtaaagaaaggaaggatatggaaatggaaggaaatcgtgagaaagaggaaaccctac |
1058248 |
T |
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| Q |
401 |
ctcct |
405 |
Q |
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||||| |
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| T |
1058249 |
ctcct |
1058253 |
T |
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