View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7723_low_27 (Length: 418)

Name: NF7723_low_27
Description: NF7723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7723_low_27
NF7723_low_27
[»] chr5 (4 HSPs)
chr5 (80-407)||(7392593-7392920)
chr5 (156-363)||(13954871-13955078)
chr5 (249-308)||(29685506-29685566)
chr5 (251-308)||(12566647-12566704)
[»] chr8 (1 HSPs)
chr8 (151-358)||(10248998-10249205)
[»] chr1 (8 HSPs)
chr1 (201-363)||(7856985-7857147)
chr1 (245-313)||(16146873-16146941)
chr1 (245-318)||(24658285-24658358)
chr1 (252-313)||(52277939-52278000)
chr1 (167-280)||(34774648-34774761)
chr1 (271-318)||(46815065-46815112)
chr1 (249-308)||(4391311-4391371)
chr1 (251-313)||(8327249-8327311)
[»] chr2 (4 HSPs)
chr2 (200-308)||(14107050-14107158)
chr2 (227-308)||(37771319-37771400)
chr2 (240-363)||(7873622-7873744)
chr2 (249-308)||(42049044-42049104)
[»] scaffold0063 (1 HSPs)
scaffold0063 (229-359)||(57453-57583)
[»] scaffold0050 (1 HSPs)
scaffold0050 (227-318)||(36173-36264)
[»] chr6 (1 HSPs)
chr6 (151-307)||(20702453-20702607)
[»] chr4 (4 HSPs)
chr4 (239-359)||(38640089-38640209)
chr4 (251-318)||(53814155-53814222)
chr4 (249-308)||(1798854-1798914)
chr4 (249-308)||(10388271-10388331)
[»] chr3 (5 HSPs)
chr3 (229-313)||(14193424-14193508)
chr3 (247-306)||(40024152-40024211)
chr3 (227-313)||(25647167-25647253)
chr3 (229-303)||(37122807-37122881)
chr3 (245-318)||(47235048-47235122)
[»] chr7 (3 HSPs)
chr7 (245-308)||(3477752-3477815)
chr7 (247-306)||(34389397-34389456)
chr7 (254-318)||(42533940-42534004)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 80 - 407
Target Start/End: Complemental strand, 7392920 - 7392593
Alignment:
Q  80 cgtttccggcggcggaagttgggtatgttgttggtgggtggtccggttagagtgagtgttggtagtgacggggtgatggtgacgaatgtgtggtgtgaag 179  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||     
T  7392920 cgtttccggcggcggaagttgggtcggctgttggtgggtggtccggttggagtgagtgttggtagtgacggggtggtggtgacgaatgtgtggtgtgaat 7392821  T
Q  180 ggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactccc 279  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7392820 ggggtgaattgtggagccgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactccc 7392721  T
Q  280 ggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgggcttcagattttgcttgttttggtcccacgacgtcactat 379  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||| |    
T  7392720 ggatcgtttgtcgtcgtaaggatcgtggtggttagggtttgtttacactggtggccatgggcttcagattttgcttgttttggtcccatgacgtcactgt 7392621  T
Q  380 gtgttccttatttttactattctgatgt 407  Q
    |||||||||||||||||||||| |||||    
T  7392620 gtgttccttatttttactattccgatgt 7392593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 156 - 363
Target Start/End: Complemental strand, 13955078 - 13954871
Alignment:
Q  156 tggtgacgaatgtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacga 255  Q
    |||||||| | |||| ||||| |||||||||  | |||  ||| |||||||  || ||||||||||| |  |||||||| || ||||| |||||||||||    
T  13955078 tggtgacggacgtgtcgtgtggagggggtgatgtatggtttcgataggtgttatctgtttccggtggctacaggtgtggcggcatctctttcattcacga 13954979  T
Q  256 ttaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgggcttcagattttgctt 355  Q
    |||||||||| ||||| |||||||| |||||||||||| |||||||||||||| ||||||||||||| ||| ||| || | |||||||||||||||||||    
T  13954978 ttaatcctccttcaacaaactcccgaatcgtttgtcgttgtaaggatcgtggtggttggggtttgttcacgacggtggtcgtgggcttcagattttgctt 13954879  T
Q  356 gttttggt 363  Q
    | ||||||    
T  13954878 gatttggt 13954871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 29685506 - 29685566
Alignment:
Q  249 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 308  Q
    ||||||||||||||||| ||  || |||||||| |||||| ||||||||||||||||||||    
T  29685506 ttcacgattaatcctccttcttcgcaactcccgaatcgttcgtcgtcgtaaggatcgtggt 29685566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 12566647 - 12566704
Alignment:
Q  251 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggt 308  Q
    ||||||||||||||| || |||  ||||||||||||| |||||| || ||||||||||    
T  12566647 cacgattaatcctccttcgacgctctcccggatcgttcgtcgtcatatggatcgtggt 12566704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 151 - 358
Target Start/End: Complemental strand, 10249205 - 10248998
Alignment:
Q  151 ggtgatggtgacgaatgtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcatt 250  Q
    |||| |||||||| | |||||||||| |||||||||  ||||| | || |||||||| |||||||||| ||  |  || ||||| || ||||| ||||||    
T  10249205 ggtggtggtgacggacgtgtggtgtggagggggtgatgtgtggtgccgataggtgtggtccgtttccgatgactacagttgtggcggcatctctttcatt 10249106  T
Q  251 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgggcttcagattt 350  Q
    ||||||||||||||| |||||||||||||  |||||||||  |||||||||||||||| |||||||||||||  | |||| ||   ||||||||||||||    
T  10249105 cacgattaatcctccttcaacgaactcccaaatcgtttgtgatcgtaaggatcgtggtggttggggtttgttcgcaccggtggttgtgggcttcagattt 10249006  T
Q  351 tgcttgtt 358  Q
    ||||||||    
T  10249005 tgcttgtt 10248998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 363
Target Start/End: Original strand, 7856985 - 7857147
Alignment:
Q  201 aggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaagg 300  Q
    ||||||| | ||||||||||||  ||| |||||| || ||||| | |||||| |||||||||||| |||||||||| | |||||||||||||||||||||    
T  7856985 aggtgtggttcgtttccggtggccgtacgtgtggaggcatctcttccattcatgattaatcctccttcaacgaacttctggatcgtttgtcgtcgtaagg 7857084  T
Q  301 atcgtggttgttggggtttgtttacgccggcggccatgggcttcagattttgcttgttttggt 363  Q
    |||||| | |||| ||||||||   | ||| || | ||||||||||||| |||||||||||||    
T  7857085 atcgtgatggttgaggtttgttcgtgtcggtggtcgtgggcttcagattctgcttgttttggt 7857147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 16146873 - 16146941
Alignment:
Q  245 ttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 313  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  16146873 ttcatccacgattaatcctccttcaacgaactcccggatcgtttgtcgtcataaggatcgtggtggttg 16146941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 24658285 - 24658358
Alignment:
Q  245 ttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 318  Q
    ||||| || |||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| |||| ||||    
T  24658285 ttcatccatgattaatcctccttcaacgaactcccggattgtttgttgtcgtaaggatcgtggtggttgtggtt 24658358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 52277939 - 52278000
Alignment:
Q  252 acgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 313  Q
    |||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||| ||||    
T  52277939 acgattaatcctccatcaacgaacttctggatcgtatgtcgtcgtaaggatcgtggtggttg 52278000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 280
Target Start/End: Original strand, 34774648 - 34774761
Alignment:
Q  167 gtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccc 266  Q
    |||||||||| |||||||||   |||| | || |||||||| || ||||||||||| |  |||||||| |  ||||| ||||| |||||||||||||||     
T  34774648 gtgtggtgtggagggggtgataagtggtgccgataggtgtggtctgtttccggtggcttcaggtgtggcgacatctctttcatacacgattaatcctcct 34774747  T
Q  267 tcaacgaactcccg 280  Q
    | ||||||||||||    
T  34774748 ttaacgaactcccg 34774761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 46815112 - 46815065
Alignment:
Q  271 cgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 318  Q
    |||||||||||||||||||| ||||||||||||||||| |||| ||||    
T  46815112 cgaactcccggatcgtttgttgtcgtaaggatcgtggtggttgtggtt 46815065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 4391311 - 4391371
Alignment:
Q  249 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 308  Q
    ||||||||||||||||| ||  || |||||| |||||||| ||||||||||||||||||||    
T  4391311 ttcacgattaatcctccttcttcgcaactcctggatcgttcgtcgtcgtaaggatcgtggt 4391371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 8327311 - 8327249
Alignment:
Q  251 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 313  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||||||  |||||| ||| ||||    
T  8327311 cacgattaatcctccctcatcgtgctcccggatcgttcgtcgtcgtttggatcggggtggttg 8327249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 14107158 - 14107050
Alignment:
Q  200 taggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaag 299  Q
    |||||||| ||||||||| | || || | ||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  14107158 taggtgtgatccgtttccagcggctgcaagtgtggtggcatctctttcattcacgattaatcttccttcaacgaactcccggatcgtttgtcgtcgtaag 14107059  T
Q  300 gatcgtggt 308  Q
    |||| ||||    
T  14107058 gatcatggt 14107050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 37771400 - 37771319
Alignment:
Q  227 aggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggt 308  Q
    ||||||||||| ||||  |||| ||| |||||||||||  ||||||||||||||||||||||||||| ||||| ||||||||    
T  37771400 aggtgtggtggaatctttttcagtcatgattaatcctctttcaacgaactcccggatcgtttgtcgttgtaagaatcgtggt 37771319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 363
Target Start/End: Original strand, 7873622 - 7873744
Alignment:
Q  240 tctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgg 339  Q
    |||| |||||| |||||||||||| | ||||||||||  ||||| |||||||||| ||||||||||||| |||| || ||||| ||| ||| |||| |||    
T  7873622 tctctttcatttacgattaatccttcttcaacgaactttcggatggtttgtcgtcataaggatcgtggtggttgtgg-ttgttcacg-cggtggccgtgg 7873719  T
Q  340 -gcttcagattttgcttgttttggt 363  Q
     |||| |||||||||||||||||||    
T  7873720 tgctttagattttgcttgttttggt 7873744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 42049104 - 42049044
Alignment:
Q  249 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 308  Q
    ||||||||||||||||| ||  || |||| ||||||||||  |||||||||||||||||||    
T  42049104 ttcacgattaatcctccttcttcgtaacttccggatcgttcctcgtcgtaaggatcgtggt 42049044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 229 - 359
Target Start/End: Original strand, 57453 - 57583
Alignment:
Q  229 gtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgcc 328  Q
    |||||| | |||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| || |||||  |||     
T  57453 gtgtggcgatatctctttctttcacgattaatcctccttcaacaaactcccggatcgtttgtcgtcgtaaggatcgtggtggttgtgg-ttgttcgcgct 57551  T
Q  329 ggcggccatgg-gcttcagattttgcttgttt 359  Q
    || |||| ||| ||||| ||||||||||||||    
T  57552 ggtggccgtggtgcttcggattttgcttgttt 57583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 318
Target Start/End: Original strand, 36173 - 36264
Alignment:
Q  227 aggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 318  Q
    |||||||| |||||||| | |||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  36173 aggtgtggcggtatctcttccattcatgattaatcctccttcaacgaactcctggatcgtttgtcgtcgtaaggatcgtggtggttgtggtt 36264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 151 - 307
Target Start/End: Complemental strand, 20702607 - 20702453
Alignment:
Q  151 ggtgatggtgacgaatgtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcatt 250  Q
    |||| |||||||| | |||||||||||||||||  |  ||||| |||| || ||||| |||| |||||   | || ||||||||||| ||||  ||||||    
T  20702607 ggtggtggtgacggacgtgtggtgtgaaggggg--atgtgtggtgtcgatatgtgtgatccggttccgacagctgcaggtgtggtggcatctatttcatt 20702510  T
Q  251 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtgg 307  Q
    || |||||||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  20702509 catgattaatcctccttcaacgaactcccggatcgtttgttatcgtaaggatcgtgg 20702453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 239 - 359
Target Start/End: Complemental strand, 38640209 - 38640089
Alignment:
Q  239 atctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatg 338  Q
    ||||| |||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| || |||||  |||||| || | ||    
T  38640209 atctctttcattcatgattaatcctccttcaacgaactcccgaatcgtttgtcgtcgtaaggatcgtggtggttgtgg-ttgttcgcgccggtgggcctg 38640111  T
Q  339 g-gcttcagattttgcttgttt 359  Q
    | ||||||| ||||||||||||    
T  38640110 gtgcttcagtttttgcttgttt 38640089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 53814222 - 53814155
Alignment:
Q  251 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 318  Q
    ||||||| ||||||| |||||| |||| ||||| ||| |||||||||||||||||||| |||| ||||    
T  53814222 cacgattgatcctccttcaacgcactctcggattgttcgtcgtcgtaaggatcgtggtggttgtggtt 53814155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 1798854 - 1798914
Alignment:
Q  249 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 308  Q
    ||||||||||||||||| ||  || ||||||||||||||| ||| ||||||||||||||||    
T  1798854 ttcacgattaatcctccttcttcgcaactcccggatcgttcgtcttcgtaaggatcgtggt 1798914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 10388271 - 10388331
Alignment:
Q  249 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 308  Q
    ||||| ||||||||||| ||  || ||||||||||||||| ||||||||||||||| ||||    
T  10388271 ttcacaattaatcctccttcttcgcaactcccggatcgttcgtcgtcgtaaggatcatggt 10388331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 14193424 - 14193508
Alignment:
Q  229 gtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 313  Q
    ||||||||||||||| | ||||||||||||||| | | |||||||  ||||||||||||||||||||||||||||||||| ||||    
T  14193424 gtgtggtggtatctcttccattcacgattaatcatacttcaacgagatcccggatcgtttgtcgtcgtaaggatcgtggtggttg 14193508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 40024211 - 40024152
Alignment:
Q  247 cattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtg 306  Q
    |||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  40024211 cattcatgattaatcctccttcaacaaactctcggatcgtttgtcgtcgtaaggatcgtg 40024152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 25647167 - 25647253
Alignment:
Q  227 aggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 313  Q
    |||||||| | |||||| | |||||| |||||||| ||| |||||| |||||||||||||||||| ||||||||| |||||| ||||    
T  25647167 aggtgtggcgatatctcttccattcatgattaatcatccttcaacggactcccggatcgtttgtcatcgtaaggaccgtggtggttg 25647253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 37122807 - 37122881
Alignment:
Q  229 gtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatc 303  Q
    ||||||||  ||||| |||||||| ||||||||||||   |||||||||||  ||||||||||||||||||||||    
T  37122807 gtgtggtgacatctctttcattcatgattaatcctcctggaacgaactcccatatcgtttgtcgtcgtaaggatc 37122881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 47235048 - 47235122
Alignment:
Q  245 ttcattcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 318  Q
    ||||| ||||||||||||||| |||||| ||||| ||| ||||| || || |||||||||||||| |||| ||||    
T  47235048 ttcatccacgattaatcctccttcaacgcaactctcgggtcgttcgttgttgtaaggatcgtggtggttgtggtt 47235122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 3477752 - 3477815
Alignment:
Q  245 ttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggt 308  Q
    |||||| |||||||||||||| |||||||||||| || ||||||||| ||||||||||||||||    
T  3477752 ttcatttacgattaatcctccttcaacgaactcctggctcgtttgtcatcgtaaggatcgtggt 3477815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 34389397 - 34389456
Alignment:
Q  247 cattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtg 306  Q
    |||||| |||||||||||| ||||| |||| |||||||||||||||||||||||||||||    
T  34389397 cattcatgattaatcctccttcaacaaacttccggatcgtttgtcgtcgtaaggatcgtg 34389456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 42534004 - 42533940
Alignment:
Q  254 gattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 318  Q
    |||||||||||  |||||||||| ||| ||||||||||||||||||||||||||| |||| ||||    
T  42534004 gattaatcctctttcaacgaacttccgaatcgtttgtcgtcgtaaggatcgtggtggttgtggtt 42533940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University